| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma19g32550.1 |
| Family | GH28 |
| Protein Properties | Length: 467 Molecular Weight: 51765.4 Isoelectric Point: 5.1389 |
| Chromosome | Chromosome/Scaffold: 19 Start: 40298861 End: 40301973 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 67 | 386 | 0 |
| TFPAPGKYLTATVFLKSGVVLNVESGATILGGTRLEDYPEESWRWYVVVAENATDVGIRGGGAVDGQAAKFVVREDPRKNVMVSWNQTGACLGDECRPRL IGFLDCNNVQVSNITLNQPAYWCLHLVRSNNICIQDIAIYGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVYNLTVTDCWIRSKSSAIK LGSASWFDFKHFVFDNIAIVDSHRGIGFQIRDGGNVSDIVFSNMNISTRYYDSLWWGRAEPIYVTSCPRDSSSKEASISNVLFINITANSENGIFLSGSK RGLLRNLRFIDMDITYRRFT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 467 Download |
| MNKSILLLLL FFLLNPSLLA TSHPLNPIPV TLSVADFGAA GDGLRYDTEA IQSAINSCPE 60 GDPCHVTFPA PGKYLTATVF LKSGVVLNVE SGATILGGTR LEDYPEESWR WYVVVAENAT 120 DVGIRGGGAV DGQAAKFVVR EDPRKNVMVS WNQTGACLGD ECRPRLIGFL DCNNVQVSNI 180 TLNQPAYWCL HLVRSNNICI QDIAIYGDFN IPNNDGIDIE DSNNTVITRC HIDTGDDAIC 240 PKSSTGPVYN LTVTDCWIRS KSSAIKLGSA SWFDFKHFVF DNIAIVDSHR GIGFQIRDGG 300 NVSDIVFSNM NISTRYYDSL WWGRAEPIYV TSCPRDSSSK EASISNVLFI NITANSENGI 360 FLSGSKRGLL RNLRFIDMDI TYRRFTNYAG GLLDYRPGCQ ELVKHRTAGI MMEHIEGLEV 420 KNVEMRWSND QLEQWNNPLE FRPSTVNNIS FLNFNSGLYT NSKSNY* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-12 | 32 | 256 | 237 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 2.0e-12 | 31 | 239 | 219 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-14 | 29 | 367 | 360 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-15 | 58 | 382 | 348 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 7.0e-44 | 32 | 307 | 310 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 30 | 460 | 33 | 472 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 30 | 460 | 33 | 472 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 6 | 457 | 10 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 6 | 457 | 10 | 460 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 26 | 459 | 7 | 442 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 3e-17 | 17 | 274 | 138 | 449 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2uvf_A | 3e-17 | 17 | 274 | 138 | 449 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2uve_B | 3e-17 | 17 | 274 | 138 | 449 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 3e-17 | 17 | 274 | 138 | 449 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 2e-16 | 32 | 307 | 28 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
