Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma19g32760.1 |
Family | CE8 |
Protein Properties | Length: 396 Molecular Weight: 43225.5 Isoelectric Point: 6.6125 |
Chromosome | Chromosome/Scaffold: 19 Start: 40474501 End: 40477076 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 95 | 387 | 0 |
CVDRKGCCNFTTVQAAVNAVPDFSVKRTIIWINSGMYYEKVLVPKTKPNITFQGQGYTSTAIAWNDTALSANGTFYSGSVQVFGSNFIAKNISFMNLAPM PSPGAVGAQAVAIRVSGDQSEFSGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCEIVSIANPVPAGQKSINGAVTAHGRVSGDENTGF AFVNSTIGGNGRIWLGRAWRPYSRVVFAFSIMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGPGANTNFRAPYVQKLNETQALAFLNTSFIDG |
Full Sequence |
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Protein Sequence Length: 396 Download |
MSLQSNLLSL LVALAAVFAS LNLINPIPQF LNNFTYFSLT TLSPSSAYLA KPLTWNFWRD 60 HHHKKHPDSG NTDSICDDFP PGIPPPNTNT TSYLCVDRKG CCNFTTVQAA VNAVPDFSVK 120 RTIIWINSGM YYEKVLVPKT KPNITFQGQG YTSTAIAWND TALSANGTFY SGSVQVFGSN 180 FIAKNISFMN LAPMPSPGAV GAQAVAIRVS GDQSEFSGCG FFGAQDTLHD DKGRHYFKDC 240 YIQGSIDFIF GNARSLYENC EIVSIANPVP AGQKSINGAV TAHGRVSGDE NTGFAFVNST 300 IGGNGRIWLG RAWRPYSRVV FAFSIMSDII APEGWNDFND PSRDQTIFYG EYNCSGPGAN 360 TNFRAPYVQK LNETQALAFL NTSFIDGDQW LETSK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 4.0e-94 | 96 | 391 | 304 | + pectinesterase | ||
PLN02634 | PLN02634 | 3.0e-104 | 93 | 391 | 306 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-105 | 96 | 391 | 297 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 7.0e-123 | 94 | 393 | 307 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 24 | 394 | 371 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08648.1 | 0 | 1 | 393 | 1 | 389 | Pectinesterase [Medicago truncatula] |
RefSeq | NP_172023.1 | 0 | 68 | 394 | 65 | 391 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002267842.1 | 0 | 1 | 392 | 1 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323171.1 | 0 | 18 | 393 | 1 | 377 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521065.1 | 0 | 67 | 393 | 67 | 393 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 94 | 394 | 9 | 311 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.00053e-42 | 95 | 394 | 6 | 307 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-17 | 103 | 362 | 43 | 338 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000000000008 | 91 | 264 | 2 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000000000008 | 91 | 264 | 2 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |