| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma19g37180.1 |
| Family | CE8 |
| Protein Properties | Length: 411 Molecular Weight: 45619 Isoelectric Point: 6.7661 |
| Chromosome | Chromosome/Scaffold: 19 Start: 44391287 End: 44394695 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 104 | 393 | 0 |
| TVDLKGCANFSSVQKAVDAVPESSSDTTLIIIDSGTYREKVVVQANKTNLIVQGQGYLNTTIEWNDTANSTGGTSYSYSFAVFASKFTAYNISFKNTAPP PSPGVVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDGGRHYFKECFIQGSIDFIFGNARSLYEDCTINCVAKEEKDGISGSITAQGRQSMNEESGFSFV NCSIVGSGRVWLGRAWGAYATVVFSRTYMSDVVAPDGWNDWRDPSRDQSVFFGEYRCLGPGANYTSRVPYAKQLRDYEANSYTNISYIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 411 Download |
| MGFNRTLFWL SVFVIFLFSI IFVLYTTPPS PAANTAISPQ DSFSFQIGIF SKIIKLSGAE 60 HFMSLITSIA RRRHHHRRSH KEKCDRSKWD SKLIQDYNVS LVLTVDLKGC ANFSSVQKAV 120 DAVPESSSDT TLIIIDSGTY REKVVVQANK TNLIVQGQGY LNTTIEWNDT ANSTGGTSYS 180 YSFAVFASKF TAYNISFKNT APPPSPGVVG AQAVALRVTG DQAAFYGCGF YGAQDTLNDD 240 GGRHYFKECF IQGSIDFIFG NARSLYEDCT INCVAKEEKD GISGSITAQG RQSMNEESGF 300 SFVNCSIVGS GRVWLGRAWG AYATVVFSRT YMSDVVAPDG WNDWRDPSRD QSVFFGEYRC 360 LGPGANYTSR VPYAKQLRDY EANSYTNISY IDGTDWLLDY FQNYVNPSYI * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 7.0e-92 | 96 | 397 | 302 | + putative pectinesterase | ||
| PLN02665 | PLN02665 | 2.0e-102 | 102 | 398 | 298 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 7.0e-104 | 101 | 397 | 304 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 4.0e-127 | 99 | 398 | 307 | + pectinesterase family protein | ||
| PLN02304 | PLN02304 | 4.0e-143 | 96 | 400 | 309 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI30191.1 | 0 | 45 | 409 | 40 | 411 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_181209.1 | 0 | 88 | 397 | 76 | 385 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002264941.1 | 0 | 102 | 409 | 14 | 321 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326223.1 | 0 | 87 | 408 | 2 | 321 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519425.1 | 0 | 30 | 400 | 30 | 370 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 2.99878e-43 | 103 | 397 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-40 | 109 | 409 | 11 | 316 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 9e-18 | 113 | 386 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 9e-18 | 113 | 386 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 9e-18 | 113 | 386 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
