| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma19g38241.1 |
| Family | GT41 |
| Protein Properties | Length: 972 Molecular Weight: 108165 Isoelectric Point: 5.7077 |
| Chromosome | Chromosome/Scaffold: 19 Start: 45201700 End: 45219210 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT41 | 408 | 896 | 0 |
| IKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQCLKIDPDSRNAGQNRLLAMNYIEEGHDDTLFEVHR DWGRRFMRLYSQYTSWDNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYSNFKVIVYSAVVKADSKTIRFREKVVNKGGIWKDIYGIDEKMVANMV REDQVDILVELTGHTANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSLEAGPVCPTPALSNGFVTF GSFNNLAKITPKVLQVWVRILCAIPNSRLVVKCKPFCSDSVRQIFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG VPCVTMAGSVHAHNVGVSLLSKVGLEHLIARNEDEYVELAQQLASDISALQNLRMSLRNLMSKSPLCDGAKFILGLESTYRNMWHRYCR | |||
| Full Sequence |
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| Protein Sequence Length: 972 Download |
| MLCYSYSFTL LPHSNFQNPN FFLEIFSSLP RFHFHCFFLR LVASIANSVT FFVQMAGADN 60 GDGNGSEREL AGNSDNGSVE VAEASVSDSG CEGNDSVSYA NVLRSRNKFV DALAIYERVL 120 ESDGANVEAL IGKGICLQMQ NKGRLAYESF SEAIKVDPQN ACALTHCGIL HKDEGRLVEA 180 AESYQKALQV DPSYKAAAEC LAIVLTDIGT NIKLAGNTQD GIQKYFEALK VDPHYAPAYY 240 NLGVVYSEMM QYDTALSFYE KAASERPVYA EAYCNMGVIF KNRGDLESAI TCYERCLTVS 300 PNFEIAKNNM AIALTDLGTK VKLEGDINQG VTLYKKALYY NWHYADAMYN LGVAYGEMLK 360 FDMAIVFYEL AFHFNPHCAE ACNNLGVIYK DRENLDKAVE CYQLALSIKP NFSQSLNNLG 420 VVYTVQGKVD AAASMIEKAI IANPTYAEAY NNLGVLYRDA GDIARAINAY EQCLKIDPDS 480 RNAGQNRLLA MNYIEEGHDD TLFEVHRDWG RRFMRLYSQY TSWDNSKDPE RPLVIGYVSP 540 DYFTHSVSYF IEAPLVYHDY SNFKVIVYSA VVKADSKTIR FREKVVNKGG IWKDIYGIDE 600 KMVANMVRED QVDILVELTG HTANNKLGMM ACRPAPIQVT WIGYPNTTGL PTIDYRITDS 660 LADPPETKQK HVEELVRLPE CFLCYTPSLE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV 720 LQVWVRILCA IPNSRLVVKC KPFCSDSVRQ IFLSTLEQLG LEPLRVDLLP LILLNHDHMQ 780 AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLSKV GLEHLIARNE 840 DEYVELAQQL ASDISALQNL RMSLRNLMSK SPLCDGAKFI LGLESTYRNM WHRYCRGDVP 900 SLKRMELLQV ATGDLSNKNS EPTRIANSRE DSPGSVKANG FKTRPVSKLN IHSCEENDGS 960 SNHSSKQGKT S* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00189 | TPR | 5.0e-17 | 346 | 445 | 100 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 7.0e-18 | 204 | 302 | 99 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 3.0e-19 | 313 | 411 | 99 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 1.0e-22 | 380 | 479 | 100 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| COG3914 | Spy | 3.0e-90 | 252 | 894 | 673 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | O82039 | 0 | 55 | 971 | 1 | 932 | SPY_PETHY RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY |
| RefSeq | XP_002281883.1 | 0 | 55 | 961 | 1 | 914 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002308458.1 | 0 | 55 | 971 | 1 | 934 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323412.1 | 0 | 55 | 950 | 1 | 911 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530535.1 | 0 | 55 | 971 | 1 | 930 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1w3b_B | 5e-36 | 130 | 486 | 37 | 378 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 2e-29 | 155 | 486 | 27 | 344 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 7e-27 | 101 | 420 | 75 | 380 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 7e-26 | 242 | 507 | 39 | 329 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 0.000000000008 | 97 | 285 | 207 | 388 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY295408 | 401 | 475 | 872 | 0 |
| GT041789 | 337 | 390 | 726 | 0 |
| GT041789 | 109 | 217 | 323 | 0.00000000001 |
| GT041789 | 125 | 281 | 403 | 0.0000005 |
| GT041789 | 107 | 326 | 430 | 0.000006 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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