| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma19g38241.2 |
| Family | GT41 |
| Protein Properties | Length: 918 Molecular Weight: 101756 Isoelectric Point: 5.3935 |
| Chromosome | Chromosome/Scaffold: 19 Start: 45201700 End: 45219210 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT41 | 372 | 842 | 0 |
| QGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQCLKIDPDSRNAGQNRLLAMNYIEEGHDDTLFEVHRDWGRRFMRLYSQYTSWDN SKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYSNFKVIVYSAVVKADSKTIRFREKVVNKGGIWKDIYGIDEKMVANMVREDQVDILVELTGHTANN KLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSLEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQVWV RILCAIPNSRLVVKCKPFCSDSVRQIFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS LLSKVGLEHLIARNEDEYVELAQQLASDISALQNLRMSLRNLMSKSPLCDGAKFILGLESTYRNMWHRYCR | |||
| Full Sequence |
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| Protein Sequence Length: 918 Download |
| MAGADNGDGN GSERELAGNS DNGSVEVAEA SVSDSGCEGN DSVSYANVLR SRNKFVDALA 60 IYERVLESDG ANVEALIGKG ICLQMQNKGR LAYESFSEAI KVDPQNACAL THCGILHKDE 120 GRLVEAAESY QKALQVDPSY KAAAECLAIV LTDIGTNIKL AGNTQDGIQK YFEALKVDPH 180 YAPAYYNLGV VYSEMMQYDT ALSFYEKAAS ERPVYAEAYC NMGVIFKNRG DLESAITCYE 240 RCLTVSPNFE IAKNNMAIAL TDLGTKVKLE GDINQGVTLY KKALYYNWHY ADAMYNLGVA 300 YGEMLKFDMA IVFYELAFHF NPHCAEACNN LGVIYKDREN LDKAVECYQL ALSIKPNFSQ 360 SLNNLGVVYT VQGKVDAAAS MIEKAIIANP TYAEAYNNLG VLYRDAGDIA RAINAYEQCL 420 KIDPDSRNAG QNRLLAMNYI EEGHDDTLFE VHRDWGRRFM RLYSQYTSWD NSKDPERPLV 480 IGYVSPDYFT HSVSYFIEAP LVYHDYSNFK VIVYSAVVKA DSKTIRFREK VVNKGGIWKD 540 IYGIDEKMVA NMVREDQVDI LVELTGHTAN NKLGMMACRP APIQVTWIGY PNTTGLPTID 600 YRITDSLADP PETKQKHVEE LVRLPECFLC YTPSLEAGPV CPTPALSNGF VTFGSFNNLA 660 KITPKVLQVW VRILCAIPNS RLVVKCKPFC SDSVRQIFLS TLEQLGLEPL RVDLLPLILL 720 NHDHMQAYSL MDISLDTFPY AGTTTTCESL YMGVPCVTMA GSVHAHNVGV SLLSKVGLEH 780 LIARNEDEYV ELAQQLASDI SALQNLRMSL RNLMSKSPLC DGAKFILGLE STYRNMWHRY 840 CRGDVPSLKR MELLQVATGD LSNKNSEPTR IANSREDSPG SVKANGFKTR PVSKLNIHSC 900 EENDGSSNHS SKQGKTS* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00189 | TPR | 5.0e-17 | 292 | 391 | 100 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 8.0e-18 | 150 | 248 | 99 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 3.0e-19 | 259 | 357 | 99 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 2.0e-22 | 326 | 425 | 100 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| COG3914 | Spy | 1.0e-90 | 198 | 840 | 673 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | O82039 | 0 | 1 | 917 | 1 | 932 | SPY_PETHY RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY |
| RefSeq | XP_002281883.1 | 0 | 1 | 907 | 1 | 914 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002308458.1 | 0 | 1 | 917 | 1 | 934 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323412.1 | 0 | 1 | 896 | 1 | 911 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530535.1 | 0 | 1 | 917 | 1 | 930 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1w3b_B | 4e-36 | 76 | 432 | 37 | 378 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 2e-29 | 101 | 432 | 27 | 344 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 7e-27 | 47 | 366 | 75 | 380 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 6e-26 | 188 | 453 | 39 | 329 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 0.000000000008 | 43 | 231 | 207 | 388 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY295408 | 401 | 421 | 818 | 0 |
| HO781209 | 361 | 484 | 844 | 0 |
| HO781209 | 118 | 384 | 501 | 0 |
| HO781209 | 69 | 203 | 269 | 0.0002 |
| HO781209 | 58 | 321 | 376 | 4.9 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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