| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma19g40740.1 |
| Family | GH28 |
| Protein Properties | Length: 463 Molecular Weight: 50601.6 Isoelectric Point: 7.2703 |
| Chromosome | Chromosome/Scaffold: 19 Start: 47080241 End: 47083418 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 90 | 418 | 0 |
| DSACQSESAVNVILVPQGFSFLIQSTIFTGPCQGVLVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPHGT TLPGPCDSPIAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNDMKIYNSVISNGDDCVSIGSGCNDVDIKNITC GPGHGISIGSLGNHNSRACVSNIMVRDSFIKVTDNGVRIKTWQGGSGSVSGVTFSNIHMVSVRNPIIIDQFYCLTKECTNKTSAVSVSNIIYTNIKGTYD IRSPPMRFACSDSVPCTNLTLSDIELLPS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 463 Download |
| MKHSHILPLA FCIFFLTLVI LVQARHHSHH TKHKHSHSHK SCKTPKPAPP PSPPHNENYN 60 NASGILDVRK FGAIGDGETD DTGSFKMAWD SACQSESAVN VILVPQGFSF LIQSTIFTGP 120 CQGVLVLKVD GTLMPPDGPE SWPKNNSRHQ WLVFYRINGM SLEGSGLIDG RGEKWWDLPC 180 KPHKGPHGTT LPGPCDSPIA IRFFMSSNLT VQGLRIKNSP QFHFRFDGCK NVHIESIYIT 240 APKLSPNTDG IHIENTNDMK IYNSVISNGD DCVSIGSGCN DVDIKNITCG PGHGISIGSL 300 GNHNSRACVS NIMVRDSFIK VTDNGVRIKT WQGGSGSVSG VTFSNIHMVS VRNPIIIDQF 360 YCLTKECTNK TSAVSVSNII YTNIKGTYDI RSPPMRFACS DSVPCTNLTL SDIELLPSQG 420 DIVHDPFCWN AYGDLETLTI PPVSCLLEGT PQSVLDYDIT RC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-78 | 63 | 446 | 390 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 3.0e-83 | 61 | 442 | 394 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-85 | 93 | 415 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 5.0e-98 | 66 | 415 | 353 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-116 | 65 | 442 | 380 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37004.1 | 0 | 61 | 462 | 84 | 484 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272733.1 | 0 | 61 | 462 | 65 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002302793.1 | 0 | 1 | 462 | 1 | 457 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320271.1 | 0 | 61 | 462 | 38 | 438 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515219.1 | 0 | 58 | 462 | 136 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 6e-23 | 160 | 415 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-23 | 160 | 415 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-23 | 160 | 415 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 6e-23 | 160 | 415 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 6e-23 | 160 | 415 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
