| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma19g40940.1 |
| Family | GH28 |
| Protein Properties | Length: 469 Molecular Weight: 51507.7 Isoelectric Point: 4.6502 |
| Chromosome | Chromosome/Scaffold: 19 Start: 47220429 End: 47224700 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 416 | 0 |
| ADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGGRHKSLIYGHNLTDVIITGNNGTIDGQGSIWWNRFMNR TLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTVQNVRILAPHDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPST NIIIHRLVGKTQTSGIAIGSEMSGGVSEVHAEDIQFYDSYNGIRIKTSPGRGGYVRNIYVSNVSLANVDIAIWFTGSYGEHPDDAYDPNALPVIEKVTIK DVVGENIKTAGLIEGIEGDNFVNICLSNIILNVTSNYPWNCSYV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 469 Download |
| MRIPSTLVEV LLVFALFCSS PWTVWSSNTL CQQTNEEVRP HSVSITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFADKGGAKL FVPAGRWLTG SFDLISHLTL WLDKDAVILG STNPEDWPVV 120 DPLPSYGRGR ELPGGRHKSL IYGHNLTDVI ITGNNGTIDG QGSIWWNRFM NRTLDYTRPH 180 LVELMNSTGV LISNLTFLNS PFWTIHPVYC SQVTVQNVRI LAPHDSPNTD GIDPDSSDNV 240 CIEDCYISTG DDLIAIKSGW DEYGIAYGRP STNIIIHRLV GKTQTSGIAI GSEMSGGVSE 300 VHAEDIQFYD SYNGIRIKTS PGRGGYVRNI YVSNVSLANV DIAIWFTGSY GEHPDDAYDP 360 NALPVIEKVT IKDVVGENIK TAGLIEGIEG DNFVNICLSN IILNVTSNYP WNCSYVKGYS 420 DLVQPEACEP LKERIFPDHC SDCYYLTNQI QSSNSQNRAG QTSGDIRG* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02188 | PLN02188 | 4.0e-26 | 41 | 380 | 355 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02218 | PLN02218 | 1.0e-26 | 40 | 410 | 379 | + polygalacturonase ADPG |
| pfam00295 | Glyco_hydro_28 | 7.0e-30 | 141 | 380 | 245 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN03003 | PLN03003 | 4.0e-33 | 41 | 384 | 352 | + Probable polygalacturonase At3g15720 |
| COG5434 | PGU1 | 9.0e-67 | 43 | 340 | 322 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18828.1 | 0 | 1 | 468 | 1 | 467 | unknown [Glycine max] |
| EMBL | CBI37055.1 | 0 | 17 | 459 | 17 | 460 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 17 | 459 | 68 | 511 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 1 | 444 | 1 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 17 | 459 | 27 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.80909e-45 | 30 | 403 | 6 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.80909e-45 | 30 | 403 | 6 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.80909e-45 | 30 | 403 | 6 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.80909e-45 | 30 | 403 | 6 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-21 | 87 | 416 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
