y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma19g41430.2 |
Family | GH28 |
Protein Properties | Length: 460 Molecular Weight: 50668.8 Isoelectric Point: 8.6758 |
Chromosome | Chromosome/Scaffold: 19 Start: 47701299 End: 47704007 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 85 | 412 | 0 |
DAACHAEESGTLFVPKGHIFMIQSTTFTGPCNSKLTFKVDGTIWPPDGPDSWPLSSRKRQWLVFYRINGMLMQGSGLIDGRGEKWWNLSYKSHKGANGAK QLGPGDRPVAIRFFESSNLRVEGLKIKNSPKFHFRFDECQNVHVEKLIIKSPALSPNTDGIHIENTTNVNIHNSVISNGDDCVSVGAGCYNVDIRNITCG PSHGISIGSLGNYNSRACVSNITVSDSIIKHSDNGVRIKTWQGGRGAVSKVVFNNIQMDTVRNPIIIDQYYCPSKNCHNQSYAVSVSNVSYSNIKGTYDA RSPPMRFACSDSVPCTNLTLSEVELLPA |
Full Sequence |
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Protein Sequence Length: 460 Download |
MFLQRITLFL IFITCLFFPT IRGKLHSHAN GKQWLPMSRI WLPPSPSPEV VSPNANGPFV 60 FNVKSFGAVG DGVSDDTEAF KLAWDAACHA EESGTLFVPK GHIFMIQSTT FTGPCNSKLT 120 FKVDGTIWPP DGPDSWPLSS RKRQWLVFYR INGMLMQGSG LIDGRGEKWW NLSYKSHKGA 180 NGAKQLGPGD RPVAIRFFES SNLRVEGLKI KNSPKFHFRF DECQNVHVEK LIIKSPALSP 240 NTDGIHIENT TNVNIHNSVI SNGDDCVSVG AGCYNVDIRN ITCGPSHGIS IGSLGNYNSR 300 ACVSNITVSD SIIKHSDNGV RIKTWQGGRG AVSKVVFNNI QMDTVRNPII IDQYYCPSKN 360 CHNQSYAVSV SNVSYSNIKG TYDARSPPMR FACSDSVPCT NLTLSEVELL PAAHSQGKIL 420 TNPFCWKVYG TVQTLTTPHV LCLLEGNQLT LKPRDVVWC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 7.0e-80 | 61 | 443 | 387 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 3.0e-82 | 56 | 409 | 362 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-87 | 95 | 409 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-97 | 58 | 409 | 354 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-118 | 60 | 438 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 56 | 446 | 84 | 471 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 2 | 459 | 7 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 1 | 446 | 1 | 459 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 60 | 446 | 21 | 404 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 6 | 446 | 1 | 457 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 9e-29 | 154 | 409 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-29 | 154 | 409 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-29 | 154 | 409 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-29 | 154 | 409 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 9e-29 | 154 | 409 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |