Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma20g02840.1 |
Family | GH28 |
Protein Properties | Length: 379 Molecular Weight: 40004.3 Isoelectric Point: 8.363 |
Chromosome | Chromosome/Scaffold: 20 Start: 2465850 End: 2469191 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 368 | 0 |
WSKACASTNPASIYVPQGKFLLKSVTFNGKCNNKGISITIDGTLVAPSDYSVTGSAGTWLEFERVDGVSIRGGVLDGQGTALWDCKNSGRGNCPSGATTL AFTNSNNIAIGGLTSMNSQMFHIVFNGCQNVKLQGVKVLADGNSPNTDGIHVQMSSHITILNSKIRTGDDCISVADYSIGSLGKDLKEAGVQNVTVKTVT FTGTQNGVRIKTWGRPSNGFVRNVLFQDAIMVNVENPVIIDQNYCPNNKGCPDQASGVKVSDVTYQDIHGTSATHVAVKFDCSSKYPCNGIKLEDVKLTY KNQPALASCNHA |
Full Sequence |
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Protein Sequence Length: 379 Download |
MTNPTPKPSP SLLITLRVIL GCWLCSSVAF GATYNVVNFG AKSDGKTDST KAFLNAWSKA 60 CASTNPASIY VPQGKFLLKS VTFNGKCNNK GISITIDGTL VAPSDYSVTG SAGTWLEFER 120 VDGVSIRGGV LDGQGTALWD CKNSGRGNCP SGATTLAFTN SNNIAIGGLT SMNSQMFHIV 180 FNGCQNVKLQ GVKVLADGNS PNTDGIHVQM SSHITILNSK IRTGDDCISV ADYSIGSLGK 240 DLKEAGVQNV TVKTVTFTGT QNGVRIKTWG RPSNGFVRNV LFQDAIMVNV ENPVIIDQNY 300 CPNNKGCPDQ ASGVKVSDVT YQDIHGTSAT HVAVKFDCSS KYPCNGIKLE DVKLTYKNQP 360 ALASCNHAGG AALGSVQPE |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-77 | 61 | 368 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-81 | 26 | 379 | 377 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-85 | 36 | 378 | 367 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 6.0e-93 | 33 | 378 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-126 | 11 | 378 | 386 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD33834.1 | 0 | 13 | 378 | 7 | 389 | polygalacturonase [Prunus domestica subsp. insititia] |
DDBJ | BAC22689.1 | 0 | 1 | 378 | 1 | 394 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 1 | 378 | 1 | 394 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 1 | 378 | 1 | 394 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 13 | 379 | 11 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000007 | 129 | 355 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.0000000001 | 33 | 371 | 20 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 0.00000003 | 101 | 365 | 69 | 339 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 0.00000003 | 101 | 365 | 69 | 339 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 0.00000003 | 101 | 365 | 69 | 339 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |