| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma20g19200.1 |
| Family | PL1 |
| Protein Properties | Length: 490 Molecular Weight: 53879.9 Isoelectric Point: 8.4231 |
| Chromosome | Chromosome/Scaffold: 20 Start: 26831454 End: 26837430 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 202 | 408 | 0 |
| VIQDKPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWV DHNSLSHCADGLVDAVLGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS QGNRYNA | |||
| Full Sequence |
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| Protein Sequence Length: 490 Download |
| MLEPSESTPP NSLSLLFLSS TFSLTKATTH TLRARGIQLS AMAVSSSSAT KWVVFLLLAL 60 LIREEAMATP QISDLRNLEV ERHRLPSLTN SSMAERAKEA EKLNEQAAVA NPEEVVSMVE 120 MSIQNSTERR KLGFFSCGTG NPIDDCWRCD PNWQRNRKRL ADCGIGFGRN AIGGRDGKFY 180 VVTDPRDDDP VNPKPGTLRH AVIQDKPLWI VFKRDMVIQL KQELIMNSFK TIDGRGVNVH 240 IANGACITIQ FVTNVIIHGL HIHDCKPTGN AMVRSSPTHF GWRTMADGDA ISIFGSSHIW 300 VDHNSLSHCA DGLVDAVLGS TAITISNNHF THHNEVILLG HSDSYTRDKQ MQVTIAYNHF 360 GEGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYNAPT NRFAKEVTKR 420 VETAESQWKG WNWRSEGDLL LNGAYFTPSG AGASASYARA SSLGAKSSSM VGSMTSNAGA 480 LGCKRGSQC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-28 | 228 | 404 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-73 | 221 | 406 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-83 | 215 | 409 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK66161.1 | 0 | 122 | 489 | 1 | 368 | pectate lyase [Fragaria x ananassa] |
| GenBank | ACB12931.1 | 0 | 76 | 489 | 40 | 452 | pectate lyase 1-27 [Populus tremula x Populus tremuloides] |
| DDBJ | BAF43573.1 | 0 | 68 | 489 | 6 | 425 | pectate lyase [Prunus persica] |
| RefSeq | XP_002297822.1 | 0 | 42 | 489 | 1 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304700.1 | 0 | 76 | 489 | 40 | 452 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 141 | 481 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 141 | 481 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 6e-17 | 210 | 406 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000003 | 231 | 383 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 0.0000000000003 | 231 | 480 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778688 | 435 | 58 | 490 | 0 |
| CK262438 | 319 | 152 | 470 | 0 |
| ES827871 | 315 | 176 | 490 | 0 |
| EC964189 | 308 | 183 | 490 | 0 |
| FG606120 | 339 | 109 | 447 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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