| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma20g24670.1 |
| Family | PL1 |
| Protein Properties | Length: 503 Molecular Weight: 54757.6 Isoelectric Point: 6.2719 |
| Chromosome | Chromosome/Scaffold: 20 Start: 34329145 End: 34334735 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 136 | 341 | 0 |
| IQDEPLWIVFAADMTINLKHELIFNSYKTLDGRGANVHVTGHGCITLQYVSNIIIHNIHVHHCTPSGNTNIRASPTHVGWRGKSDGDGISIFGSRKIWID HCSLSYCTDGLIDAIMGSTGITISNSHFAHHDEVMLLGHDDKYLPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWKMYAIGGSANPTINSQ GNRYTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 503 Download |
| MLHITCILLM CLLSSFSPPI NALLNLTLPH QHPHPESVVH DLQRKVNASL WRREMLSKED 60 QQEGMSSSSC LTGNPIDDCW RCDPNWAADR QKLAECGLGF GKYAMGGKGG QIYIVTDSSD 120 RDPANPVPGT LRHAVIQDEP LWIVFAADMT INLKHELIFN SYKTLDGRGA NVHVTGHGCI 180 TLQYVSNIII HNIHVHHCTP SGNTNIRASP THVGWRGKSD GDGISIFGSR KIWIDHCSLS 240 YCTDGLIDAI MGSTGITISN SHFAHHDEVM LLGHDDKYLP DRGMQVTIAF NHFGEGLVQR 300 MPRCRLGYIH VVNNDFTQWK MYAIGGSANP TINSQGNRYT APADPDAKEV TKRVDTDDRE 360 WSGWNWRTEG DIMVNGAFFV PSGAGQSAQY AEATSVQAKS AVQIDQLTMY SGVFGDPRDN 420 GDLYPGFNGG GTVTGATSKG NTEGSSSDDG DFFGMIFRGS SSSQAAPPSP SSSIVFVSTF 480 LSLLIIFILD TTTNHAILLS LL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-22 | 201 | 337 | 149 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-60 | 144 | 339 | 204 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-67 | 148 | 342 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_196051.2 | 0 | 6 | 477 | 18 | 505 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002268818.1 | 0 | 1 | 468 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316399.1 | 0 | 7 | 418 | 8 | 415 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519460.1 | 0 | 1 | 431 | 1 | 430 | Pectate lyase precursor, putative [Ricinus communis] |
| RefSeq | XP_002534016.1 | 0 | 6 | 467 | 8 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 74 | 413 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 74 | 413 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 6e-17 | 105 | 339 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.00000000000009 | 186 | 388 | 114 | 330 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jrg_B | 0.00000000000009 | 186 | 388 | 114 | 330 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
