Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma20g30240.2 |
Family | GH28 |
Protein Properties | Length: 353 Molecular Weight: 38944.6 Isoelectric Point: 8.2902 |
Chromosome | Chromosome/Scaffold: 20 Start: 38917955 End: 38919722 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 68 | 308 | 0 |
KQSNLTRPYMIEIMFSDQIQISNLTLVNSPSWFVHPIYSSNITIKGLTILAPVDSPNTDGIDPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGKPT QHLVIRRLTCISPDSAVIALGSEMSGGIQDVRVEDIIAISTQSTVRIKTAVGRGMSLSTMKYVFWMTGSYGSHPDAGFDPKALPNITGINYRDVVATNVT YSAKLEGISNAPFTGICISNVSIQVSEQRKKLQWNCTDVAG |
Full Sequence |
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Protein Sequence Length: 353 Download |
MSRLHKTQPT IINIPRHSIK LKVCMNKEPR IYFKPNLRQI FRDSFSNSDN CCHNLSHEST 60 PNANFDKKQS NLTRPYMIEI MFSDQIQISN LTLVNSPSWF VHPIYSSNIT IKGLTILAPV 120 DSPNTDGIDP DSCTNTRIED CYIVSGDDCV AVKSGWDEYG IKFGKPTQHL VIRRLTCISP 180 DSAVIALGSE MSGGIQDVRV EDIIAISTQS TVRIKTAVGR GMSLSTMKYV FWMTGSYGSH 240 PDAGFDPKAL PNITGINYRD VVATNVTYSA KLEGISNAPF TGICISNVSI QVSEQRKKLQ 300 WNCTDVAGVT SNVSPNSCQL LPEKGKLGCP FPNDKLPIEN VQLKTCSLKN VF* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-10 | 88 | 216 | 133 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 1.0e-10 | 84 | 219 | 140 | + polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-15 | 73 | 315 | 262 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-21 | 66 | 291 | 236 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 5.0e-32 | 74 | 221 | 148 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 65 | 350 | 167 | 464 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 65 | 351 | 179 | 474 | unknown [Glycine max] |
RefSeq | XP_002299511.1 | 0 | 65 | 348 | 179 | 475 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002327490.1 | 0 | 65 | 347 | 158 | 449 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 65 | 347 | 179 | 470 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-28 | 55 | 314 | 170 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-28 | 55 | 314 | 170 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-28 | 55 | 314 | 170 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-28 | 55 | 314 | 170 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000002 | 75 | 216 | 151 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG171598 | 268 | 69 | 326 | 0 |
CX665315 | 290 | 73 | 349 | 0 |
CX665540 | 296 | 67 | 349 | 0 |
HO760745 | 287 | 73 | 346 | 0 |
CF512873 | 301 | 65 | 352 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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