| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma20g38490.1 |
| Family | PL1 |
| Protein Properties | Length: 335 Molecular Weight: 37762.9 Isoelectric Point: 7.089 |
| Chromosome | Chromosome/Scaffold: 20 Start: 46064843 End: 46067524 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 64 | 243 | 0 |
| IVFEVSGTIHLSSYLSVSSYKTIDGRGQRVKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCTLRDYDDGLIDITRQSTDITVSR CCFGQHDKTMLIGADPTHIGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNVYEA | |||
| Full Sequence |
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| Protein Sequence Length: 335 Download |
| MAGMQKLPYG DVDSSLRALA GRAEGFGRLA IGGLHGPLYF VTTLSDDGPG SLREGCRRKE 60 PLWIVFEVSG TIHLSSYLSV SSYKTIDGRG QRVKLTGKGL RLKECEHIII CNLEFEGGRG 120 HDVDGIQIKP NSRHIWIDRC TLRDYDDGLI DITRQSTDIT VSRCCFGQHD KTMLIGADPT 180 HIGDRCIRVT IHHCFFDGTR QRQPRVRFGK VHLYNNYTRN WGIYAVCASV ESQIYSQCNV 240 YEAGTKKKTF EFYTEKAVDK EEQKSGFIIS EGDMFLNGAE PSLLTENREE SMFHPSEYYP 300 TWTMEAAGHS LREVLLLCTG WQSICRPVDN MVLQ* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 3.0e-39 | 59 | 241 | 203 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 2.0e-45 | 32 | 300 | 295 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 1.0e-67 | 78 | 244 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB75748.1 | 0 | 4 | 332 | 1 | 339 | pectate lyase-like protein [Arabidopsis thaliana] |
| EMBL | CBI32661.1 | 0 | 4 | 333 | 1 | 328 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_191074.2 | 0 | 4 | 332 | 1 | 329 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002311134.1 | 0 | 4 | 328 | 1 | 325 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526780.1 | 0 | 4 | 315 | 1 | 312 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 4.99997e-41 | 13 | 307 | 15 | 335 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 4.99997e-41 | 13 | 307 | 15 | 335 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-29 | 31 | 299 | 22 | 308 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 1e-26 | 80 | 241 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 3e-20 | 85 | 242 | 82 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DY275282 | 330 | 4 | 332 | 0 |
| JG177860 | 307 | 24 | 330 | 0 |
| DY277275 | 300 | 7 | 306 | 0 |
| CX546286 | 292 | 12 | 303 | 0 |
| DY277275 | 27 | 306 | 332 | 6 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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