Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.001G009400.1 |
Family | CE8 |
Protein Properties | Length: 379 Molecular Weight: 41821.1 Isoelectric Point: 9.7475 |
Chromosome | Chromosome/Scaffold: 01 Start: 901649 End: 905369 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 80 | 372 | 0 |
ITVDKNPKSGDFTKIQDAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKAFITIEGAGADKTIVQWGDTAQTPGARGQPLGTYGSATFAVNSPYFIAKHI TFKNTAPIPAPGAIGKQAVAFRISADTATFVGCRFLGAQDTLYDHFGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARLTGAVTAQNRGSILDDTGF SFVKCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIILPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAKPFISLSFIDG |
Full Sequence |
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Protein Sequence Length: 379 Download |
MSKFQCFLYI VILVLLLNSA QTLCHTKGIK LKRKHHHKQS NVTGTHVSEQ PFMQWVKFVG 60 SLNHSVFRTA KNKLFPSRTI TVDKNPKSGD FTKIQDAIDS LPFINLVRVV IKVHAGVYTE 120 KVNIPPLKAF ITIEGAGADK TIVQWGDTAQ TPGARGQPLG TYGSATFAVN SPYFIAKHIT 180 FKNTAPIPAP GAIGKQAVAF RISADTATFV GCRFLGAQDT LYDHFGRHYY KDCYIEGSVD 240 FIFGNALSLF EGCHVHAIAR LTGAVTAQNR GSILDDTGFS FVKCKVTGSG ALYLGRAWGP 300 FSRVVFAYTY MDNIILPKGW YNWGDPNREM TVFYGQYKCT GPGASFAGRV SWSRELTDEE 360 AKPFISLSFI DGSEWIKL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 8.0e-114 | 79 | 377 | 307 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-117 | 78 | 376 | 300 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-118 | 69 | 377 | 309 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 8.0e-119 | 78 | 376 | 301 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 1 | 378 | 379 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 1 | 378 | 1 | 379 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 66 | 378 | 1 | 313 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 19 | 378 | 23 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 11 | 378 | 13 | 381 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 1 | 378 | 1 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 88 | 377 | 16 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7.9874e-44 | 88 | 377 | 12 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-26 | 82 | 364 | 35 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 8e-19 | 91 | 364 | 18 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 8e-19 | 91 | 364 | 18 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |