Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.001G009400.2 |
Family | CE8 |
Protein Properties | Length: 340 Molecular Weight: 37444.2 Isoelectric Point: 9.9 |
Chromosome | Chromosome/Scaffold: 01 Start: 902937 End: 905245 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 89 | 333 | 0 |
ITVDKNPKSGDFTKIQDAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKAFITIEGAGADKTIVQWGDTAQTPGARGQPLGTYGSATFAVNSPYFIAKHI TFKNTAPIPAPGAIGKQAVAFRISADTATFVGCRFLGAQDTLYDHFGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARLTGAVTAQNRGSILDDTGF SFVKCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIILPKGWYNWG |
Full Sequence |
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Protein Sequence Length: 340 Download |
ASCHKHTCIM SKFQCFLYIV ILVLLLNSAQ TLCHTKGIKL KRKHHHKQSN VTGTHVSEQP 60 FMQWVKFVGS LNHSVFRTAK NKLFPSRTIT VDKNPKSGDF TKIQDAIDSL PFINLVRVVI 120 KVHAGVYTEK VNIPPLKAFI TIEGAGADKT IVQWGDTAQT PGARGQPLGT YGSATFAVNS 180 PYFIAKHITF KNTAPIPAPG AIGKQAVAFR ISADTATFVG CRFLGAQDTL YDHFGRHYYK 240 DCYIEGSVDF IFGNALSLFE GCHVHAIARL TGAVTAQNRG SILDDTGFSF VKCKVTGSGA 300 LYLGRAWGPF SRVVFAYTYM DNIILPKGWY NWGDPNREM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 8.0e-90 | 87 | 338 | 254 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 1.0e-90 | 88 | 338 | 259 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-92 | 78 | 338 | 261 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-97 | 87 | 332 | 246 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 0 | 10 | 339 | 331 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 10 | 339 | 1 | 331 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 75 | 339 | 1 | 265 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 28 | 339 | 23 | 335 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 20 | 339 | 13 | 333 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 10 | 339 | 1 | 335 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9.99967e-42 | 97 | 332 | 16 | 252 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-34 | 97 | 332 | 12 | 248 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-24 | 91 | 329 | 35 | 303 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 1e-16 | 100 | 329 | 18 | 279 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 1e-16 | 100 | 329 | 18 | 279 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |