| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.001G093600.1 |
| Family | CE8 |
| Protein Properties | Length: 396 Molecular Weight: 43348 Isoelectric Point: 6.6018 |
| Chromosome | Chromosome/Scaffold: 01 Start: 10411288 End: 10416128 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 94 | 385 | 0 |
| CVDQNGCCNFTTVQAAVDAVPNLSMKRSVIWINTGIYYEKVIIPKTKPNITFQGQGYTSTAIAWNDTANSANGTFYSGSVQVFSTNFIAKNMSFMNVAPL PRPGDVGAQAVAIRIAGDQAAFWGCGFYGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGKSLYEDCQLISMANQVAPGSKSINGAVTAHGRASADEDSGF AFVNCSIGGTGRIWLGRAWRPYSRVVFALTSMTDIIAPEGWNDFNDPSRDQTIFYGEYNCTGAGANMNGRAPYVQKLNDTQASLFLTASFID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 396 Download |
| MNPKSLCFTI LIAILAIFIS RFIIDPSPHF HKIIIDSSLT LSSSSCIIMK FIPFDFSDFC 60 RHRKHPDKGK PVSVCDDFPP NIPPPETNTT LTLCVDQNGC CNFTTVQAAV DAVPNLSMKR 120 SVIWINTGIY YEKVIIPKTK PNITFQGQGY TSTAIAWNDT ANSANGTFYS GSVQVFSTNF 180 IAKNMSFMNV APLPRPGDVG AQAVAIRIAG DQAAFWGCGF YGAQDTLHDD RGRHYFKDCY 240 IQGSIDFIFG NGKSLYEDCQ LISMANQVAP GSKSINGAVT AHGRASADED SGFAFVNCSI 300 GGTGRIWLGR AWRPYSRVVF ALTSMTDIIA PEGWNDFNDP SRDQTIFYGE YNCTGAGANM 360 NGRAPYVQKL NDTQASLFLT ASFIDADQWL QSYNS* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02432 | PLN02432 | 3.0e-98 | 95 | 391 | 297 | + putative pectinesterase |
| PLN02634 | PLN02634 | 7.0e-103 | 95 | 390 | 303 | + probable pectinesterase |
| PLN02665 | PLN02665 | 1.0e-114 | 95 | 390 | 297 | + pectinesterase family protein |
| PLN02682 | PLN02682 | 1.0e-127 | 95 | 391 | 304 | + pectinesterase family protein |
| PLN02304 | PLN02304 | 0 | 62 | 394 | 333 | + probable pectinesterase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABN08648.1 | 0 | 1 | 392 | 1 | 389 | Pectinesterase [Medicago truncatula] |
| RefSeq | NP_172023.1 | 0 | 67 | 391 | 65 | 389 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267842.1 | 0 | 1 | 393 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002323171.1 | 0 | 20 | 393 | 3 | 378 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002521065.1 | 0 | 25 | 395 | 28 | 396 | Pectinesterase-1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 93 | 392 | 9 | 310 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 1e-39 | 94 | 392 | 6 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 3e-17 | 102 | 361 | 43 | 338 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 1e-16 | 103 | 384 | 18 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 1e-16 | 103 | 384 | 18 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
