y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.001G093900.1 |
Family | CBM43 |
Protein Properties | Length: 246 Molecular Weight: 26312.8 Isoelectric Point: 7.9903 |
Chromosome | Chromosome/Scaffold: 01 Start: 10436964 End: 10439553 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 159 | 241 | 1.8e-32 |
WCVAKPTVPDSIIQAAMDYACGSGGNCKAIQPNEPCFQPNTLISHASFAFNSYWLNTKGNGGTCDFGGTAMLVTVDPSFNKCK |
Full Sequence |
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Protein Sequence Length: 246 Download |
MDSMTHCSNL FNSVLFISIL ATIFSHCDAR FMFHMWNQKG SNHHESPINK QKLTSHFVSN 60 VDPYTINSPL YLPPFDSLSP LPQPGGSPFT PCPPPPPSSH SHGSSANPPS IFFSSPPQHQ 120 PTPPEHGLTP RPIYGPPKLN PPSSLVPPPK SSRSGGGVWC VAKPTVPDSI IQAAMDYACG 180 SGGNCKAIQP NEPCFQPNTL ISHASFAFNS YWLNTKGNGG TCDFGGTAML VTVDPSFNKC 240 KFGHA* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 6.0e-23 | 159 | 229 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-38 | 159 | 242 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78496.1 | 0 | 1 | 244 | 1 | 261 | hypothetical protein [Vitis vinifera] |
EMBL | CBI34142.1 | 0 | 10 | 244 | 1 | 252 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_178066.2 | 7e-39 | 121 | 242 | 251 | 394 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002264622.1 | 0 | 1 | 240 | 1 | 258 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002520569.1 | 0 | 80 | 242 | 69 | 246 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-18 | 146 | 242 | 4 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |