| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.001G098100.1 |
| Family | GH28 |
| Protein Properties | Length: 421 Molecular Weight: 43964.4 Isoelectric Point: 7.91 |
| Chromosome | Chromosome/Scaffold: 01 Start: 11021038 End: 11022611 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 66 | 399 | 0 |
| KEACASTSPAKIVVPKGIYFLSTATLDGPCKAPIELQVEGTVKAPADPGALKEPKWIAFNKIENFKLSGAGVFDGQGTTAYKRKGCEKHNFCGSLPINLR FDFLTNAMIQGVTTKDSKQFHVNVLGCKNITFEHFTVLAPGESPNTDGIHIGRSDGVNVLNTEIKTGDDCVSIGDGTKNLVINGVTCGPGHGISIGSLGL FKNEEPVDGVTVKNCTLTNTSNGVRIKSWPGAEPGTCSNIHFEDITVTNVSSPIIIDQKYCPWNKCKINEESKVKLSNISFKNIHGTSALPEAVKIICSA TLPCENVELADIEIMHSGPTGPAVSQCSNVKPKV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 421 Download |
| MAIQFNFVSS MLILLLLTIS SAKAQKAGGG GGGGGGGGGV IDVVAKFGAK ADEKTDLSKP 60 LLDAWKEACA STSPAKIVVP KGIYFLSTAT LDGPCKAPIE LQVEGTVKAP ADPGALKEPK 120 WIAFNKIENF KLSGAGVFDG QGTTAYKRKG CEKHNFCGSL PINLRFDFLT NAMIQGVTTK 180 DSKQFHVNVL GCKNITFEHF TVLAPGESPN TDGIHIGRSD GVNVLNTEIK TGDDCVSIGD 240 GTKNLVINGV TCGPGHGISI GSLGLFKNEE PVDGVTVKNC TLTNTSNGVR IKSWPGAEPG 300 TCSNIHFEDI TVTNVSSPII IDQKYCPWNK CKINEESKVK LSNISFKNIH GTSALPEAVK 360 IICSATLPCE NVELADIEIM HSGPTGPAVS QCSNVKPKVS GKQNPVACSA PVPAKPTPTS 420 * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-82 | 44 | 398 | 361 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-90 | 43 | 408 | 373 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 3.0e-92 | 44 | 408 | 367 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 6.0e-114 | 44 | 408 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-119 | 69 | 400 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADC53480.1 | 0 | 1 | 420 | 1 | 412 | polygalacturonase [Gossypium hirsutum] |
| DDBJ | BAA89477.1 | 0 | 20 | 408 | 21 | 393 | polygalacturonase [Salix gilgiana] |
| Swiss-Prot | Q39766 | 0 | 1 | 420 | 1 | 407 | PGLR_GOSBA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Swiss-Prot | Q39786 | 0 | 1 | 420 | 1 | 407 | PGLR_GOSHI RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002329175.1 | 0 | 8 | 408 | 6 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 4e-18 | 66 | 401 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-18 | 66 | 401 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-18 | 66 | 401 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-18 | 66 | 401 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 4e-18 | 66 | 401 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
