| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.001G158900.1 |
| Family | GH28 |
| Protein Properties | Length: 483 Molecular Weight: 52853.8 Isoelectric Point: 9.3194 |
| Chromosome | Chromosome/Scaffold: 01 Start: 22817434 End: 22820725 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 85 | 434 | 0 |
| ASDGGAQLYVPAGKWLTGSFSLTSHFTLYLQKHALLLASQDMKEWPVLKPLPSYGRGRDAAGGRFTSLIYGTNLTDVIVTGANGTIDGQGSFWWQKFHKG KLKYTRPYIIEFMYSDTIQISNLTLLNSPSWNVHPVYSSNILIKGIKILAPVKSPNTDGINPDSCTNVRIEDSYIVSGDDCIAVKSGWDEYGISFGMPTK QLVIRRLTCISPYSAAIALGSEMSGGIQDVRAEDITSVHTESGVRIKTARGRGGFVKDIFVRRMSLHTMKWVFWMTGNYKQHADNHYDPNALPVIQGINY RDIVANNVSMAARLEGIEGDPFTQICIANVTIGMAAKAKKVPWTCTDVEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 483 Download |
| MELLGMSPMR TKMTRIVTVL LLVGFILGVR GGEARKGKVT ESFAYTGISC RRHTASITDF 60 GGVGDGKTSN TKAFQDAVNH LSKYASDGGA QLYVPAGKWL TGSFSLTSHF TLYLQKHALL 120 LASQDMKEWP VLKPLPSYGR GRDAAGGRFT SLIYGTNLTD VIVTGANGTI DGQGSFWWQK 180 FHKGKLKYTR PYIIEFMYSD TIQISNLTLL NSPSWNVHPV YSSNILIKGI KILAPVKSPN 240 TDGINPDSCT NVRIEDSYIV SGDDCIAVKS GWDEYGISFG MPTKQLVIRR LTCISPYSAA 300 IALGSEMSGG IQDVRAEDIT SVHTESGVRI KTARGRGGFV KDIFVRRMSL HTMKWVFWMT 360 GNYKQHADNH YDPNALPVIQ GINYRDIVAN NVSMAARLEG IEGDPFTQIC IANVTIGMAA 420 KAKKVPWTCT DVEGITSGVS PRPCDLLPDQ GQKKIAACDF PAEPLSIDRV VLKTCTYRVN 480 HM* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-23 | 57 | 343 | 295 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-27 | 57 | 354 | 306 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-29 | 153 | 343 | 196 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-29 | 54 | 442 | 405 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 3.0e-56 | 55 | 357 | 326 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 32 | 481 | 40 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| RefSeq | NP_191708.1 | 0 | 9 | 480 | 1 | 476 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002277736.1 | 0 | 32 | 481 | 28 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 26 | 482 | 14 | 470 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511903.1 | 0 | 1 | 482 | 1 | 472 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.000000000000002 | 49 | 394 | 151 | 529 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
