Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.001G184600.1 |
Family | PL1 |
Protein Properties | Length: 447 Molecular Weight: 49945.5 Isoelectric Point: 8.7107 |
Chromosome | Chromosome/Scaffold: 01 Start: 29407470 End: 29411199 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 160 | 364 | 0 |
IQDRPLWIVFKRDMVIRLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNIIIHGIHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGASHIWVD HNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTVAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYL |
Full Sequence |
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Protein Sequence Length: 447 Download |
MGISNRLLSS LALLVTFILF FVCVKASAEK TELNSRFSEE NKLQGLKNSS MEEGLEDVQW 60 INEHSVDNPE EIASMVDMSI RNSTERRKLG YFSCGTGNPV DDCWRCDRHW YLRRKNLANC 120 GIGFGRNAIG GRDGRYYVVT DPRDDDPVNP KPGTLRHAVI QDRPLWIVFK RDMVIRLKQE 180 LIMNSFKTID GRGANVHIAN GACITIQYVT NIIIHGIHIH DCKPTGNAMV RSSPSHYGWR 240 TMADGDGISI FGASHIWVDH NSLSNCADGL IDAIMGSTAI TISNNYFTHH NEVMLLGHSD 300 SYVRDKQMQV TVAYNHFGEG LIQRMPRCRH GYFHVVNNDY THWEMYAIGG SANPTINSQG 360 NRYLAPFNRF AKEVTKRVER SKSKWRHWNW RSEGDMFLNG AYFTPSGAGA AASYAKASSL 420 AAKSSALVGT ITSNAGALSC RRGFMC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-26 | 185 | 361 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-71 | 178 | 363 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-81 | 172 | 366 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX88800.1 | 0 | 1 | 446 | 1 | 437 | ripening-related pectate lyase [Mangifera indica] |
EMBL | CAN75298.1 | 0 | 32 | 446 | 26 | 445 | hypothetical protein [Vitis vinifera] |
EMBL | CBI33346.1 | 0 | 34 | 446 | 25 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 32 | 446 | 26 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002521130.1 | 0 | 15 | 446 | 15 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 98 | 439 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 98 | 439 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-16 | 167 | 365 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 188 | 340 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.00000000000003 | 176 | 437 | 78 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |