| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.001G193800.1 |
| Family | GH28 |
| Protein Properties | Length: 401 Molecular Weight: 42522.1 Isoelectric Point: 4.3437 |
| Chromosome | Chromosome/Scaffold: 01 Start: 32833018 End: 32834670 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 48 | 380 | 0 |
| KEACASPEPVNIVIPEGTYLLSEATLNGPCQAPISLQLQGTLMAPEDPTVFKEPTWVSISYVDSLTMFGGGVFDGQGATAWGQNDCSKNKNCVKLPINIR FHNVKNSLIQDITTKDSKQFHVNVLGCSNITFQSFTVSAPEESLNTDGIHIGRSDGVYILDSKIETGDDCVSLGDGSNNVKVQGVTCGPGHGISIGSLGK YKNEEPISGVFVTQCTLANTMNGVRIKTWPASQPGSATDIHFEDITMDNVGNPILVDQEYCPWNQCDLSVPSRVQLSKLSFKNIRGTSKTQIAVKLICSS GLPCDEVELADIDLTYNGPEGPAISQCSNVHPA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 401 Download |
| MNIAITALLL LFTLIPIVEC TDIDVVAKFG AVADGQTDLS LPLMNAWKEA CASPEPVNIV 60 IPEGTYLLSE ATLNGPCQAP ISLQLQGTLM APEDPTVFKE PTWVSISYVD SLTMFGGGVF 120 DGQGATAWGQ NDCSKNKNCV KLPINIRFHN VKNSLIQDIT TKDSKQFHVN VLGCSNITFQ 180 SFTVSAPEES LNTDGIHIGR SDGVYILDSK IETGDDCVSL GDGSNNVKVQ GVTCGPGHGI 240 SIGSLGKYKN EEPISGVFVT QCTLANTMNG VRIKTWPASQ PGSATDIHFE DITMDNVGNP 300 ILVDQEYCPW NQCDLSVPSR VQLSKLSFKN IRGTSKTQIA VKLICSSGLP CDEVELADID 360 LTYNGPEGPA ISQCSNVHPA LSGVQNPAAC SSQPTGEAAP * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-85 | 26 | 361 | 342 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 3.0e-86 | 26 | 390 | 367 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-94 | 25 | 396 | 379 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-121 | 51 | 390 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-133 | 26 | 390 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADC53480.1 | 0 | 1 | 400 | 5 | 410 | polygalacturonase [Gossypium hirsutum] |
| DDBJ | BAA89476.1 | 0 | 26 | 390 | 33 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 26 | 390 | 33 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 26 | 390 | 33 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002274125.1 | 0 | 26 | 391 | 30 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-20 | 81 | 382 | 36 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-20 | 81 | 382 | 36 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-20 | 81 | 382 | 36 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-20 | 81 | 382 | 36 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-20 | 81 | 382 | 36 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
