| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.001G206100.1 |
| Family | GH28 |
| Protein Properties | Length: 428 Molecular Weight: 47015.8 Isoelectric Point: 9.4778 |
| Chromosome | Chromosome/Scaffold: 01 Start: 40321477 End: 40323566 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 99 | 414 | 0 |
| ACSSQGATLVVPKKKVYHLKPIDFSGPCKSAISLNIQGTIKATVNHSDYERYDGRWLYFDKVQNLRVEGGGIINGNGRTWWENSCKINKALPCKEAPTAV TFNECNNLLVASLLIKNAQQMHLSFRKCVNVKAFNLLVKAPGHSPNTDGIHVTETQNININNCVIGTGDDCISIVSGSKNVRATGITCGPGHGISIGSLG ARKSAAYVSNVLVNNTILSGTTNGVRIKTWQNYCDQQKPCPKQIYIYYINADQVSAVRVSNVLYKNIRGTSASRVAMKFDCSKSFPCRGIFLQDVALRPQ EEEQEDIAKASCANVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 428 Download |
| MFLKLHCLPL FITLFSLSLS SCLGSYKEHP LHPKPYHPYF HTFGVSNKPN YPTLNSGDLF 60 NYNIEIRTSA PKIVNVDAFG AKANGRDDSQ AFKKAWKYAC SSQGATLVVP KKKVYHLKPI 120 DFSGPCKSAI SLNIQGTIKA TVNHSDYERY DGRWLYFDKV QNLRVEGGGI INGNGRTWWE 180 NSCKINKALP CKEAPTAVTF NECNNLLVAS LLIKNAQQMH LSFRKCVNVK AFNLLVKAPG 240 HSPNTDGIHV TETQNININN CVIGTGDDCI SIVSGSKNVR ATGITCGPGH GISIGSLGAR 300 KSAAYVSNVL VNNTILSGTT NGVRIKTWQN YCDQQKPCPK QIYIYYINAD QVSAVRVSNV 360 LYKNIRGTSA SRVAMKFDCS KSFPCRGIFL QDVALRPQEE EQEDIAKASC ANVRLSYRGN 420 VSPPCSS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 7.0e-79 | 74 | 414 | 363 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 1.0e-91 | 63 | 425 | 390 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-101 | 100 | 413 | 341 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-123 | 66 | 424 | 389 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-123 | 70 | 426 | 388 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26512.1 | 0 | 7 | 425 | 12 | 458 | polygalacturonase precursor [Cucumis melo] |
| Swiss-Prot | P35336 | 0 | 2 | 425 | 7 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002313308.1 | 0 | 69 | 426 | 4 | 376 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517823.1 | 0 | 21 | 425 | 22 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529616.1 | 0 | 34 | 425 | 63 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.000000000000003 | 147 | 406 | 55 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000003 | 147 | 406 | 55 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000003 | 147 | 406 | 55 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000003 | 147 | 406 | 55 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.000000000000003 | 147 | 406 | 55 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
