y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.001G239200.1 |
Family | GT5 |
Protein Properties | Length: 732 Molecular Weight: 81117.2 Isoelectric Point: 5.7687 |
Chromosome | Chromosome/Scaffold: 01 Start: 47803685 End: 47809178 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 241 | 724 | 0 |
NIILVAIECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYAEYVEPQDIGVRKKYKVDGQDMEVSYFHAYIDGVDFIFMDTPMFRHMQYNIYAGKRQ DILKRMVLFCKAAVEVPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKANYRDNGLMSFTRSILVVHNIAHQGRGPMEDFCFVGLPDHYKDLFKLYDPV GGEHFNIFAAGLKTADRVVTVSHGYAWEIRTLEGGWGLHGIINECDWKLQGIVNGIDMEDWNPQHDVHLKSDGYTNYSIETLQPGKAQCKAALQKELGLP VREDVPLIGFIGRLDHQKGVDIIAEAIPWMMDQDVQLVMLGTGRQDLEELLRQFEGQHHDKVRGWVGFSVETAHRITAGADILLMPSRFEPCGLNQLYAM CYGTIPVVHAVGGLRDTVQPFNPFAESGFGWTFDSADASKLIHALGNCLLTYREYKESWDGLRRRGMMQDLSWDNAAQKYEEVL |
Full Sequence |
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Protein Sequence Length: 732 Download |
MASIGGSSTI IIEGKSRHVF TSSTLSPTKI ENLAVFSGST SGVSLFCNRG QLWRLKPVRI 60 AGDDPEGSLQ FTIKKSKKIA ERRKLVSSIK SNITDLDEDE AFHEQRDKSL PDVELTSSSS 120 ISTVEDKNGS ILSSSHVTST VKDVSEIRPS DEVDDEPEVH LTSEKASSDL GSTKLLKTTD 180 LKAFKSDVLP SFPSSSSDAV LLTSIENENS TKASLEMVGE LHDPAVESTK PPPLAGANVM 240 NIILVAIECA PWSKTGGLGD VAGSLPKALA RRGHRVMVVA PRYAEYVEPQ DIGVRKKYKV 300 DGQDMEVSYF HAYIDGVDFI FMDTPMFRHM QYNIYAGKRQ DILKRMVLFC KAAVEVPWYV 360 PCGGVCYGDG NLVFIANDWH TALLPVYLKA NYRDNGLMSF TRSILVVHNI AHQGRGPMED 420 FCFVGLPDHY KDLFKLYDPV GGEHFNIFAA GLKTADRVVT VSHGYAWEIR TLEGGWGLHG 480 IINECDWKLQ GIVNGIDMED WNPQHDVHLK SDGYTNYSIE TLQPGKAQCK AALQKELGLP 540 VREDVPLIGF IGRLDHQKGV DIIAEAIPWM MDQDVQLVML GTGRQDLEEL LRQFEGQHHD 600 KVRGWVGFSV ETAHRITAGA DILLMPSRFE PCGLNQLYAM CYGTIPVVHA VGGLRDTVQP 660 FNPFAESGFG WTFDSADASK LIHALGNCLL TYREYKESWD GLRRRGMMQD LSWDNAAQKY 720 EEVLVAAKYQ W* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 4.0e-88 | 240 | 728 | 513 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 3.0e-135 | 240 | 722 | 493 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 8.0e-169 | 240 | 723 | 494 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 240 | 727 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 241 | 724 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF13168.1 | 0 | 55 | 731 | 52 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
GenBank | ABV25894.1 | 0 | 55 | 731 | 52 | 751 | starch synthase isoform II [Manihot esculenta] |
RefSeq | XP_002278470.1 | 0 | 46 | 731 | 60 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
RefSeq | XP_002324061.1 | 0 | 13 | 731 | 25 | 742 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531856.1 | 0 | 1 | 731 | 1 | 754 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 240 | 725 | 10 | 509 | A Chain A, Crystal Structure Of The Extracellular Domain Of Neuroligin 2a From Mouse |
PDB | 3vue_A | 0 | 240 | 725 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 240 | 723 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 240 | 730 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 240 | 730 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777841 | 312 | 421 | 732 | 0 |
HO777841 | 380 | 63 | 423 | 0 |
HO781048 | 392 | 341 | 732 | 0 |
HO445868 | 438 | 295 | 732 | 0 |
HO781048 | 46 | 299 | 344 | 0.046 |
Sequence Alignments (This image is cropped. Click for full image.) |
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