| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.001G263400.1 |
| Family | GH28 |
| Protein Properties | Length: 465 Molecular Weight: 49440.3 Isoelectric Point: 5.414 |
| Chromosome | Chromosome/Scaffold: 01 Start: 53890866 End: 53893949 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 88 | 422 | 0 |
| DACKVEASTVMVPSGSTFLVGPVSFSGPNCQPNIVFQLDGKIIAPTSSKAWGSGLLQWIEFIKLKGITIKGKGTIDGRGSVWWNDSPTAQPQDSTTNHTI SGELDGKMPSTKPTALRFYGSNGVTVSGITIQNSPQTHLKFDDCTGVQISNFVASSPSDSPNTDGIHLQNSQDVVISAATLACGDDCVSIQTGCSNVYIH DVKCGPGHGISIGGLGKDRTKACVSNITVRDVNLQNTLTGVRIKTWQGGSGSVKQVTFSDIQVSEVETPIMIDQFYCDKGHCSNQSSAVEVSEINYVNIR GTYTVQPVHFACSDSLPCSGVSLSTIELQSVKENH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 465 Download |
| MCRVNSTIIA FLSVLLFWFS SFEVTYSARE GKQWRKQSIA GGFRRLMAEG GNSDLVADAT 60 TTFNVLEYGA KGDGRTDDSK ALEAAWADAC KVEASTVMVP SGSTFLVGPV SFSGPNCQPN 120 IVFQLDGKII APTSSKAWGS GLLQWIEFIK LKGITIKGKG TIDGRGSVWW NDSPTAQPQD 180 STTNHTISGE LDGKMPSTKP TALRFYGSNG VTVSGITIQN SPQTHLKFDD CTGVQISNFV 240 ASSPSDSPNT DGIHLQNSQD VVISAATLAC GDDCVSIQTG CSNVYIHDVK CGPGHGISIG 300 GLGKDRTKAC VSNITVRDVN LQNTLTGVRI KTWQGGSGSV KQVTFSDIQV SEVETPIMID 360 QFYCDKGHCS NQSSAVEVSE INYVNIRGTY TVQPVHFACS DSLPCSGVSL STIELQSVKE 420 NHPLSGPFCW ETYGELKTST EPPISCLESG KPSNAGTQSS SDSC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-62 | 60 | 464 | 413 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 5.0e-64 | 63 | 415 | 358 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 4.0e-67 | 46 | 416 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 9.0e-72 | 59 | 419 | 366 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-82 | 63 | 449 | 391 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABW76153.1 | 0 | 27 | 464 | 28 | 483 | polygalacturonase [Vitis vinifera] |
| DDBJ | BAH56488.1 | 0 | 50 | 464 | 95 | 510 | polygalacturonase 1 [Prunus persica] |
| EMBL | CBI34901.1 | 0 | 20 | 464 | 22 | 483 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002276805.1 | 0 | 20 | 464 | 22 | 492 | PREDICTED: polygalacturonase [Vitis vinifera] |
| RefSeq | XP_002521450.1 | 0 | 20 | 451 | 23 | 457 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-22 | 154 | 429 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-22 | 154 | 429 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-22 | 154 | 429 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-22 | 154 | 429 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-22 | 154 | 429 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
