Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.002G030400.1 |
Family | CE8 |
Protein Properties | Length: 356 Molecular Weight: 39867.5 Isoelectric Point: 9.7514 |
Chromosome | Chromosome/Scaffold: 02 Start: 2241921 End: 2243756 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 62 | 347 | 0 |
KVDINGKGDYTSIQEAINAVPKGNSKWVVIHVKKGIYREKVHIPKDKRYIFMRGNGRGRTAIIWSLSSVDNKASATFTVEAKHFVAFGISFKNEAPTGVA YTSQNQSVAVFVGADRVAFYHCAFFSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSLFHNCEIFVLQDKRIAIHGSITAQNRAHQEDHSGFVFVKGKV YGIGGVYLGRAKGKYSTVVFAQTYLSRTIVPAGWTDWSYRGGPDHLFHAEYKCHGPGADTFGRVHWAKQLTDEEAKYWTSIEFING |
Full Sequence |
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Protein Sequence Length: 356 Download |
MQSPPLPLKA FQNMSPINLA FASLLIVAIY FPCFANGDDK DPVTVLDAPF LTKKINSNVT 60 IKVDINGKGD YTSIQEAINA VPKGNSKWVV IHVKKGIYRE KVHIPKDKRY IFMRGNGRGR 120 TAIIWSLSSV DNKASATFTV EAKHFVAFGI SFKNEAPTGV AYTSQNQSVA VFVGADRVAF 180 YHCAFFSTHN TLFDYKGRHY YHNCYIQGSI DFIFGRGRSL FHNCEIFVLQ DKRIAIHGSI 240 TAQNRAHQED HSGFVFVKGK VYGIGGVYLG RAKGKYSTVV FAQTYLSRTI VPAGWTDWSY 300 RGGPDHLFHA EYKCHGPGAD TFGRVHWAKQ LTDEEAKYWT SIEFINGNVW LPAWL* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 6.0e-74 | 60 | 351 | 298 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 2.0e-76 | 60 | 351 | 299 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 6.0e-83 | 59 | 351 | 293 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-85 | 60 | 352 | 306 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 0 | 14 | 355 | 343 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 23 | 355 | 13 | 346 | unknown [Glycine max] |
RefSeq | NP_188331.1 | 0 | 44 | 355 | 29 | 340 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002272939.1 | 0 | 14 | 355 | 6 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311381.1 | 0 | 13 | 354 | 2 | 341 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523016.1 | 0 | 44 | 355 | 40 | 350 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 52 | 353 | 2 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-38 | 66 | 351 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-17 | 59 | 352 | 7 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-17 | 59 | 352 | 7 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-17 | 59 | 352 | 7 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO115605 | 293 | 16 | 308 | 0 |
CO117348 | 276 | 1 | 276 | 0 |
CO124627 | 275 | 12 | 286 | 0 |
CO117349 | 215 | 142 | 356 | 0 |
CO115604 | 203 | 154 | 356 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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