y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.002G038500.1 |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 43833.1 Isoelectric Point: 9.3574 |
Chromosome | Chromosome/Scaffold: 02 Start: 3077722 End: 3079801 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 383 | 0 |
DACDQKGVSIVYIPKGVYMLGSVEFAGPCRGVTMFFMKGDLRAPRGAFLNVETWLGFRYVDNLIMKGGGTLDGQGQSAWPFNQCHKNNNCQTLPISVKFD FVTNSRIKSIRSIHSKNAHFSFFGCTNINISNVELLAPDYSPNTDGIKMGSSSNIRISYSKISTGDDCIAILSNTSNIDISNVYCGPGHGISIGSLGKYT NEKNVNGVSVRKCTLNGTDNGIRIKSWESPISITASNFLFQDIFMYNVRNPIIIDQTYCPHPPCNRQTASHVQIRDVTYRNIFGTSSSEIAVSMQCSKKF PCKNIVMTDIKFGHHGTKKSLKSYCSYVNG |
Full Sequence |
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Protein Sequence Length: 396 Download |
MAHQNIFPCI FFSILFCVSS TVAQGARTFN VKYYGAIADG RTDNRKAFLR AWMDACDQKG 60 VSIVYIPKGV YMLGSVEFAG PCRGVTMFFM KGDLRAPRGA FLNVETWLGF RYVDNLIMKG 120 GGTLDGQGQS AWPFNQCHKN NNCQTLPISV KFDFVTNSRI KSIRSIHSKN AHFSFFGCTN 180 INISNVELLA PDYSPNTDGI KMGSSSNIRI SYSKISTGDD CIAILSNTSN IDISNVYCGP 240 GHGISIGSLG KYTNEKNVNG VSVRKCTLNG TDNGIRIKSW ESPISITASN FLFQDIFMYN 300 VRNPIIIDQT YCPHPPCNRQ TASHVQIRDV TYRNIFGTSS SEIAVSMQCS KKFPCKNIVM 360 TDIKFGHHGT KKSLKSYCSY VNGRSFGRQY PPPCF* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 6.0e-81 | 7 | 395 | 393 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-89 | 28 | 391 | 371 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-92 | 56 | 364 | 309 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-92 | 27 | 395 | 377 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-124 | 5 | 394 | 404 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_175003.1 | 0 | 7 | 395 | 8 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 9 | 395 | 14 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273801.1 | 0 | 1 | 395 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300425.1 | 0 | 27 | 394 | 1 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314146.1 | 0 | 10 | 395 | 7 | 392 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 84 | 331 | 47 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.00000000000001 | 115 | 342 | 70 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.0000000000003 | 116 | 338 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000003 | 116 | 338 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000003 | 116 | 338 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |