| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.002G056900.1 |
| Family | GH28 |
| Protein Properties | Length: 356 Molecular Weight: 38141.3 Isoelectric Point: 6.5819 |
| Chromosome | Chromosome/Scaffold: 02 Start: 5677594 End: 5679112 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 24 | 334 | 0 |
| ATLDGPCKAPIEIQVEGTVKAPADPGSFKEPKWITFNRIENFKLSGGGLFDGQGTTAYKREGCKNHDYCGSLPINLRFDFLTNAMIQDITTKDSKQFHVN VLGCKNITFEHFTVSARDESPNTDGIHIGRSDGVNVLNSEIKTGDDCVSIGDGSKNLVINGVTCGPGHGISIGSLELFKNEEPVDGVTVKNCTFTNTSNG VRIKTWPGAEPGTCSNIHFEDITVTNVSSPIIIDQKYCPWNKCKINEESKVKLRNISFKNIHGTSALPEAVKIICSATLPCENVEHADIEITHSGPTGPA VSQCSNVKPKV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 356 Download |
| MAIQFNCVSS MLILVLLSIS SVEATLDGPC KAPIEIQVEG TVKAPADPGS FKEPKWITFN 60 RIENFKLSGG GLFDGQGTTA YKREGCKNHD YCGSLPINLR FDFLTNAMIQ DITTKDSKQF 120 HVNVLGCKNI TFEHFTVSAR DESPNTDGIH IGRSDGVNVL NSEIKTGDDC VSIGDGSKNL 180 VINGVTCGPG HGISIGSLEL FKNEEPVDGV TVKNCTFTNT SNGVRIKTWP GAEPGTCSNI 240 HFEDITVTNV SSPIIIDQKY CPWNKCKINE ESKVKLRNIS FKNIHGTSAL PEAVKIICSA 300 TLPCENVEHA DIEITHSGPT GPAVSQCSNV KPKVSGKQNP APWSAPIPAK PTPTA* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 8.0e-66 | 26 | 333 | 313 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 4.0e-72 | 25 | 340 | 318 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-73 | 26 | 342 | 323 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-95 | 28 | 342 | 319 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-110 | 25 | 335 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADC53480.1 | 0 | 24 | 355 | 81 | 412 | polygalacturonase [Gossypium hirsutum] |
| DDBJ | BAA89477.1 | 0 | 23 | 336 | 73 | 386 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 23 | 336 | 73 | 386 | polygalacturonase [Salix gilgiana] |
| Swiss-Prot | Q39766 | 0 | 23 | 355 | 76 | 407 | PGLR_GOSBA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Swiss-Prot | Q39786 | 0 | 23 | 355 | 76 | 407 | PGLR_GOSHI RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-17 | 118 | 336 | 124 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-17 | 118 | 336 | 124 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-17 | 118 | 336 | 124 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-17 | 118 | 336 | 124 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-17 | 118 | 336 | 124 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
