y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.002G057100.1 |
Family | GH28 |
Protein Properties | Length: 413 Molecular Weight: 43592.7 Isoelectric Point: 7.0966 |
Chromosome | Chromosome/Scaffold: 02 Start: 5752408 End: 5754014 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 391 | 0 |
KEACASTSPAKIVIPKGIYFLSTATLDGPCKAPIELQVEGTVKAPANPVAFKEPKWITFNRIENFKLSGGGLFDGQGTTAYKREGCKNHDYCGSLPINLR FDFLTNAMIQDITTKDSKQFHVNVLGCKNITFEHFTISAPDESPNTDGIHIGRSDGVNVLNSEIKTGDDCVSIGDGSKNLVINGVTCGPGHGISIGSLGL FKNEEPVDGVTVKNCSFTNTSNGVRIKTWPGAERGTCSNIHFEDITVTNVSSPIIIDQKYCPWNKCKINEESKVKLSNISFKNIHGTSALPEAVKIICSA TLPCENVELADIEITHSGPTGPAVSQCSNVKPKV |
Full Sequence |
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Protein Sequence Length: 413 Download |
MAIQFNCVSS MLILVLLSIS SVEGQGGGGG GVIDVVAKFG AKADGKTDLS KPLLDAWKEA 60 CASTSPAKIV IPKGIYFLST ATLDGPCKAP IELQVEGTVK APANPVAFKE PKWITFNRIE 120 NFKLSGGGLF DGQGTTAYKR EGCKNHDYCG SLPINLRFDF LTNAMIQDIT TKDSKQFHVN 180 VLGCKNITFE HFTISAPDES PNTDGIHIGR SDGVNVLNSE IKTGDDCVSI GDGSKNLVIN 240 GVTCGPGHGI SIGSLGLFKN EEPVDGVTVK NCSFTNTSNG VRIKTWPGAE RGTCSNIHFE 300 DITVTNVSSP IIIDQKYCPW NKCKINEESK VKLSNISFKN IHGTSALPEA VKIICSATLP 360 CENVELADIE ITHSGPTGPA VSQCSNVKPK VSGKQNPAPC SAPLPAKPTP TA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-84 | 36 | 390 | 361 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 5.0e-91 | 36 | 400 | 367 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-93 | 35 | 400 | 373 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-117 | 61 | 400 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-120 | 36 | 400 | 369 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADC53480.1 | 0 | 1 | 412 | 1 | 412 | polygalacturonase [Gossypium hirsutum] |
DDBJ | BAA89477.1 | 0 | 31 | 400 | 29 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 31 | 400 | 29 | 393 | polygalacturonase [Salix gilgiana] |
Swiss-Prot | Q39766 | 0 | 1 | 412 | 1 | 407 | PGLR_GOSBA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Swiss-Prot | Q39786 | 0 | 1 | 412 | 1 | 407 | PGLR_GOSHI RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 2e-19 | 36 | 377 | 23 | 345 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 4e-18 | 58 | 393 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-18 | 58 | 393 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-18 | 58 | 393 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-18 | 58 | 393 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |