Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.002G098600.1 |
Family | CE8 |
Protein Properties | Length: 360 Molecular Weight: 40284.6 Isoelectric Point: 8.0756 |
Chromosome | Chromosome/Scaffold: 02 Start: 12563956 End: 12565465 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 61 | 353 | 0 |
IVVNKNGGADSVTVQGAIDMVPENNTRRVKIYILPGIYREKVTVPKCKPYISFVGNAGQMSNTIISWNDKASDKDSNGINLGTYRSASVTIESDYFCATD ITFENTVVQTPGEPGMQAVALRISGDKAMFYKVKVVGTQDTLLDEIGSHYFYQCHIQGSVDFIFGKSRSLYQDCVIESTAVRSGAIAAHRRDSPDDDTGF SFVNCKINGTGRIYLGRAWGNYSRAIYSNCYFDNIINPAGWTDWNDPLRQKTVVFGEFQCRGTGANTTGRVPWSKKLSFEEAKPFLDMKFIDG |
Full Sequence |
---|
Protein Sequence Length: 360 Download |
MEYNCSLVTV VVVFLCGFRV CFSLTTDVHV KNFISWDDIK VDEHQTRLSD SRVNRNRSRV 60 IVVNKNGGAD SVTVQGAIDM VPENNTRRVK IYILPGIYRE KVTVPKCKPY ISFVGNAGQM 120 SNTIISWNDK ASDKDSNGIN LGTYRSASVT IESDYFCATD ITFENTVVQT PGEPGMQAVA 180 LRISGDKAMF YKVKVVGTQD TLLDEIGSHY FYQCHIQGSV DFIFGKSRSL YQDCVIESTA 240 VRSGAIAAHR RDSPDDDTGF SFVNCKINGT GRIYLGRAWG NYSRAIYSNC YFDNIINPAG 300 WTDWNDPLRQ KTVVFGEFQC RGTGANTTGR VPWSKKLSFE EAKPFLDMKF IDGPQWLRL* 360 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-100 | 67 | 358 | 292 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 5.0e-103 | 67 | 357 | 294 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 2.0e-111 | 67 | 357 | 293 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 6.0e-129 | 70 | 359 | 291 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 0 | 7 | 359 | 353 | + pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC82420.1 | 0 | 35 | 359 | 50 | 399 | hypothetical protein OsI_26811 [Oryza sativa Indica Group] |
RefSeq | NP_200370.1 | 0 | 7 | 359 | 11 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002264297.1 | 0 | 33 | 359 | 34 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298857.1 | 0 | 41 | 359 | 1 | 318 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522727.1 | 0 | 8 | 359 | 33 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 61 | 358 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-40 | 62 | 358 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.00000000000002 | 53 | 352 | 26 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.0000000000004 | 60 | 249 | 7 | 206 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.0000000000004 | 60 | 249 | 7 | 206 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |