Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.002G138200.3 |
Family | PL4 |
Protein Properties | Length: 614 Molecular Weight: 70002.3 Isoelectric Point: 4.7494 |
Chromosome | Chromosome/Scaffold: 02 Start: 23506674 End: 23511133 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 5 | 590 | 0 |
GVKLYVQDKHVVLDNGILQVTISNPDGIVTAIQYNGIDNLLAVENQEADRGIEATSFEVIVENEDQVELSFSRTWDPSLEGKIVPLNIEKRFIMLRNSSG FYTYAIYEHLKEWPAFNLDRFHYMAMADNRQRYMPLPDDRLPYRSQTLAYPEAVLLVDPMETEFRGEVDDKYQYSCENKDNRVHGWICNDPPVGFWQITP SDEFRSAGPHKQNLTSHVGPTTLAVMHSVHYSGEDLILKFGSNEAWKKVFGPIFIYLNSLSDAGGNPRSLWEDAKQQMRIEVQDWPYTFPASQDFPQSHQ RGNVSGRLLVKDRYVCKDDIPANGAYVGLAPPGDVGSWQSEVKGYQFWTRADEDGYFCINNIWTGDYNLYAWVPGFIGDYKYDVIITPSAGYDIYMGDLV YEPPRDGPTLWEIGVPDRTAAEFYVPDPSPMFVNRLYVNHPDRFRQYGLWERYADLYPDRDLVYTVGVSDYTKDWFFAQVTRKNDDDTYQGTTWQIKFKL DCTANETETYKLRLALATAHAAELQVRVNDDGKSPLFSSGQIGKDNTIARHGIHGLYRLYHVGIPGNLLLEGDNTIFLTQPKSTSP |
Full Sequence |
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Protein Sequence Length: 614 Download |
MPSQGVKLYV QDKHVVLDNG ILQVTISNPD GIVTAIQYNG IDNLLAVENQ EADRGIEATS 60 FEVIVENEDQ VELSFSRTWD PSLEGKIVPL NIEKRFIMLR NSSGFYTYAI YEHLKEWPAF 120 NLDRFHYMAM ADNRQRYMPL PDDRLPYRSQ TLAYPEAVLL VDPMETEFRG EVDDKYQYSC 180 ENKDNRVHGW ICNDPPVGFW QITPSDEFRS AGPHKQNLTS HVGPTTLAVM HSVHYSGEDL 240 ILKFGSNEAW KKVFGPIFIY LNSLSDAGGN PRSLWEDAKQ QMRIEVQDWP YTFPASQDFP 300 QSHQRGNVSG RLLVKDRYVC KDDIPANGAY VGLAPPGDVG SWQSEVKGYQ FWTRADEDGY 360 FCINNIWTGD YNLYAWVPGF IGDYKYDVII TPSAGYDIYM GDLVYEPPRD GPTLWEIGVP 420 DRTAAEFYVP DPSPMFVNRL YVNHPDRFRQ YGLWERYADL YPDRDLVYTV GVSDYTKDWF 480 FAQVTRKNDD DTYQGTTWQI KFKLDCTANE TETYKLRLAL ATAHAAELQV RVNDDGKSPL 540 FSSGQIGKDN TIARHGIHGL YRLYHVGIPG NLLLEGDNTI FLTQPKSTSP FQGIMYDYIR 600 LEGPASSNGN KKA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 3.0e-29 | 304 | 403 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-53 | 6 | 263 | 287 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 6.0e-54 | 415 | 602 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-77 | 1 | 172 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 612 | 1 | 652 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 612 | 1 | 623 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 603 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 611 | 1 | 640 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 608 | 1 | 638 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479600 | 305 | 1 | 274 | 0 |
DW479599 | 295 | 1 | 264 | 0 |
DT552229 | 293 | 17 | 278 | 0 |
GW864372 | 305 | 123 | 427 | 0 |
FY792769 | 270 | 306 | 574 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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