Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.002G138200.4 |
Family | PL4 |
Protein Properties | Length: 517 Molecular Weight: 59576.8 Isoelectric Point: 4.7307 |
Chromosome | Chromosome/Scaffold: 02 Start: 23506802 End: 23511133 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 5 | 514 | 0 |
GVKLYVQDKHVVLDNGILQVTISNPDGIVTAIQYNGIDNLLAVENQEADRGYWDLVWNLAGSKGTKGKFDRIEATSFEVIVENEDQVELSFSRTWDPSLE GKIVPLNIEKRFIMLRNSSGFYTYAIYEHLKEWPAFNLDRFRVAFKLRKDKFHYMAMADNRQRYMPLPDDRLPYRSQTLAYPEAVLLVDPMETEFRGEVD DKYQYSCENKDNRVHGWICNDPPVGFWQITPSDEFRSAGPHKQNLTSHVGPTTLAVMHSVHYSGEDLILKFGSNEAWKKVFGPIFIYLNSLSDAGGNPRS LWEDAKQQMRIEVQDWPYTFPASQDFPQSHQRGNVSGRLLVKDRYVCKDDIPANGAYVGLAPPGDVGSWQSEVKGYQFWTRADEDGYFCINNIWTGDYNL YAWVPGFIGDYKYDVIITPSAGYDIYMGDLVYEPPRDGPTLWEIGVPDRTAAEFYVPDPSPMFVNRLYVNHPDRFRQYGLWERYADLYPDRDLVYTVGVS DYTKDWFFAQ |
Full Sequence |
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Protein Sequence Length: 517 Download |
MPSQGVKLYV QDKHVVLDNG ILQVTISNPD GIVTAIQYNG IDNLLAVENQ EADRGYWDLV 60 WNLAGSKGTK GKFDRIEATS FEVIVENEDQ VELSFSRTWD PSLEGKIVPL NIEKRFIMLR 120 NSSGFYTYAI YEHLKEWPAF NLDRFRVAFK LRKDKFHYMA MADNRQRYMP LPDDRLPYRS 180 QTLAYPEAVL LVDPMETEFR GEVDDKYQYS CENKDNRVHG WICNDPPVGF WQITPSDEFR 240 SAGPHKQNLT SHVGPTTLAV MHSVHYSGED LILKFGSNEA WKKVFGPIFI YLNSLSDAGG 300 NPRSLWEDAK QQMRIEVQDW PYTFPASQDF PQSHQRGNVS GRLLVKDRYV CKDDIPANGA 360 YVGLAPPGDV GSWQSEVKGY QFWTRADEDG YFCINNIWTG DYNLYAWVPG FIGDYKYDVI 420 ITPSAGYDIY MGDLVYEPPR DGPTLWEIGV PDRTAAEFYV PDPSPMFVNR LYVNHPDRFR 480 QYGLWERYAD LYPDRDLVYT VGVSDYTKDW FFAQKE* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
cd10317 | RGL4_C | 1.0e-13 | 446 | 514 | 69 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10316 | RGL4_M | 8.0e-30 | 335 | 434 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10320 | RGL4_N | 9.0e-72 | 6 | 294 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
pfam06045 | Rhamnogal_lyase | 2.0e-99 | 1 | 203 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 514 | 1 | 523 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 514 | 1 | 494 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 514 | 1 | 494 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 514 | 1 | 513 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 514 | 1 | 513 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479600 | 305 | 1 | 305 | 0 |
DW479599 | 295 | 1 | 295 | 0 |
DT552229 | 293 | 17 | 309 | 0 |
CO105666 | 228 | 14 | 241 | 0 |
DY293973 | 353 | 1 | 351 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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