| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.002G185500.1 |
| Family | GH28 |
| Protein Properties | Length: 643 Molecular Weight: 69636.3 Isoelectric Point: 6.7561 |
| Chromosome | Chromosome/Scaffold: 02 Start: 49251864 End: 49257039 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 267 | 597 | 0 |
| TACSTRKSVLLVPPGRRYLVNATKFKGPCAERLIVQIDGTIVAPDEPKNWDPDLPRLWLDFSKLQGVAFRGKGVIDGSGSKWWAASCKKNKSNPCRGAPT ALTIDSSSSIKVKGLTIQNSQQMNFVISKSEAVRVFGVKVTCPGDSPNTDGIHITKSTNIVLQDCKIGTGDDCISIVNGSSTIKMKRIYCGPGHGVSIGS LGEDNSVGIVTNVVLDTALLRETTNGVRIKTWQGGSGYVRGVRFENVRMEDVANPIIIDQFYCDSPTTCQNQTSAVQVSQIVYRNISGTTKSKQAIKFAC SNTVPCSNLVLSNVNLEKKDGTVETYCNSAQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 643 Download |
| MVSQRNWSFG PTFSYVITAC GSGGFYMEGI QVHCRVISLG FGLTLFIGSS LMNLHLHMGR 60 CSHSELSRLV FETLPIPNVF CFTSIINGYA ENGMGREGVS LYEAMVHKGL IPDEVTSLRL 120 LSGCNHAGLA KEGKLVFNLM KSFYGICPER LLCETEEQTP GGVNSVRTKS ISQTNKTEQI 180 MAKLFLVSVL GLLIAAYGVA GNVVYDKFNI LEELEDMDIA EEDTDFLESP SWTSEHGGKV 240 LVNVDSFGAV GDGVSDDTQA FRKAWDTACS TRKSVLLVPP GRRYLVNATK FKGPCAERLI 300 VQIDGTIVAP DEPKNWDPDL PRLWLDFSKL QGVAFRGKGV IDGSGSKWWA ASCKKNKSNP 360 CRGAPTALTI DSSSSIKVKG LTIQNSQQMN FVISKSEAVR VFGVKVTCPG DSPNTDGIHI 420 TKSTNIVLQD CKIGTGDDCI SIVNGSSTIK MKRIYCGPGH GVSIGSLGED NSVGIVTNVV 480 LDTALLRETT NGVRIKTWQG GSGYVRGVRF ENVRMEDVAN PIIIDQFYCD SPTTCQNQTS 540 AVQVSQIVYR NISGTTKSKQ AIKFACSNTV PCSNLVLSNV NLEKKDGTVE TYCNSAQGFG 600 YGLVHPSADC LSSQDKGFIL IDRKDNAQLT EPTGDHIIHT EL* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-83 | 241 | 587 | 355 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 2.0e-91 | 242 | 633 | 400 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-99 | 269 | 583 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-118 | 242 | 606 | 368 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-146 | 239 | 619 | 383 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28554.1 | 0.0003 | 10 | 132 | 212 | 335 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI28554.1 | 0.0000000004 | 20 | 134 | 121 | 232 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI28554.1 | 0 | 32 | 642 | 440 | 1111 | unnamed protein product [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-21 | 337 | 584 | 115 | 376 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-19 | 234 | 603 | 13 | 360 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 9e-19 | 341 | 582 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 9e-19 | 341 | 582 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 9e-19 | 341 | 582 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
