| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.002G185500.4 |
| Family | GH28 |
| Protein Properties | Length: 420 Molecular Weight: 45283.1 Isoelectric Point: 6.7476 |
| Chromosome | Chromosome/Scaffold: 02 Start: 49251852 End: 49256476 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 51 | 374 | 0 |
| TACSTRKSVLLVPPGRRYLVNATKFKGPCAERLIVQIDGTIVAPDEPKNWDPDLPRLWLDFSKLQGVAFRGKGVIDGSGSKWWAASCKKNKSNALTIDSS SSIKVKGLTIQNSQQMNFVISKSEAVRVFGVKVTCPGDSPNTDGIHITKSTNIVLQDCKIGTGDDCISIVNGSSTIKMKRIYCGPGHGVSIGSLGEDNSV GIVTNVVLDTALLRETTNGVRIKTWQGGSGYVRGVRFENVRMEDVANPIIIDQFYCDSPTTCQNQTSAVQVSQIVYRNISGTTKSKQAIKFACSNTVPCS NLVLSNVNLEKKDGTVETYCNSAQ | |||
| Full Sequence |
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| Protein Sequence Length: 420 Download |
| MDIAEEDTDF LESPSWTSEH GGKVLVNVDS FGAVGDGVSD DTQAFRKAWD TACSTRKSVL 60 LVPPGRRYLV NATKFKGPCA ERLIVQIDGT IVAPDEPKNW DPDLPRLWLD FSKLQGVAFR 120 GKGVIDGSGS KWWAASCKKN KSNALTIDSS SSIKVKGLTI QNSQQMNFVI SKSEAVRVFG 180 VKVTCPGDSP NTDGIHITKS TNIVLQDCKI GTGDDCISIV NGSSTIKMKR IYCGPGHGVS 240 IGSLGEDNSV GIVTNVVLDT ALLRETTNGV RIKTWQGGSG YVRGVRFENV RMEDVANPII 300 IDQFYCDSPT TCQNQTSAVQ VSQIVYRNIS GTTKSKQAIK FACSNTVPCS NLVLSNVNLE 360 KKDGTVETYC NSAQGFGYGL VHPSADCLSS QDKGFILIDR KDNAQLTEPT GDHIIHTEL* 420 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-84 | 27 | 364 | 341 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-92 | 26 | 410 | 393 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-94 | 53 | 360 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-109 | 26 | 383 | 368 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-138 | 23 | 396 | 383 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC98004.1 | 0 | 14 | 405 | 54 | 451 | Similar to gb |
| RefSeq | XP_002299032.1 | 0 | 5 | 419 | 42 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002317091.1 | 0 | 5 | 419 | 13 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328587.1 | 0 | 6 | 400 | 43 | 445 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525360.1 | 0 | 5 | 419 | 42 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-21 | 121 | 305 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 1e-20 | 18 | 380 | 13 | 360 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 1e-18 | 125 | 359 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-18 | 125 | 359 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-18 | 125 | 359 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FE686036 | 265 | 1 | 257 | 0 |
| GR929886 | 234 | 1 | 227 | 0 |
| GR927120 | 225 | 1 | 218 | 0 |
| EH685542 | 260 | 162 | 420 | 0 |
| DV135677 | 231 | 202 | 420 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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