| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.002G185500.5 |
| Family | GH28 |
| Protein Properties | Length: 346 Molecular Weight: 37242.1 Isoelectric Point: 7.2575 |
| Chromosome | Chromosome/Scaffold: 02 Start: 49251864 End: 49254937 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 7 | 300 | 0 |
| CSGNFSIDGTIVAPDEPKNWDPDLPRLWLDFSKLQGVAFRGKGVIDGSGSKWWAASCKKNKSNALTIDSSSSIKVKGLTIQNSQQMNFVISKSEAVRVFG VKVTCPGDSPNTDGIHITKSTNIVLQDCKIGTGDDCISIVNGSSTIKMKRIYCGPGHGVSIGSLGEDNSVGIVTNVVLDTALLRETTNGVRIKTWQGGSG YVRGVRFENVRMEDVANPIIIDQFYCDSPTTCQNQTSAVQVSQIVYRNISGTTKSKQAIKFACSNTVPCSNLVLSNVNLEKKDGTVETYCNSAQ | |||
| Full Sequence |
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| Protein Sequence Length: 346 Download |
| MCREVDCSGN FSIDGTIVAP DEPKNWDPDL PRLWLDFSKL QGVAFRGKGV IDGSGSKWWA 60 ASCKKNKSNA LTIDSSSSIK VKGLTIQNSQ QMNFVISKSE AVRVFGVKVT CPGDSPNTDG 120 IHITKSTNIV LQDCKIGTGD DCISIVNGSS TIKMKRIYCG PGHGVSIGSL GEDNSVGIVT 180 NVVLDTALLR ETTNGVRIKT WQGGSGYVRG VRFENVRMED VANPIIIDQF YCDSPTTCQN 240 QTSAVQVSQI VYRNISGTTK SKQAIKFACS NTVPCSNLVL SNVNLEKKDG TVETYCNSAQ 300 GFGYGLVHPS ADCLSSQDKG FILIDRKDNA QLTEPTGDHI IHTEL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 6.0e-65 | 34 | 290 | 266 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 2.0e-72 | 15 | 286 | 274 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 5.0e-85 | 10 | 309 | 309 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-85 | 11 | 286 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 7.0e-112 | 1 | 322 | 336 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC98004.1 | 0 | 12 | 331 | 131 | 451 | Similar to gb |
| RefSeq | XP_002299032.1 | 0 | 7 | 345 | 116 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002317091.1 | 0 | 13 | 345 | 95 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328587.1 | 0 | 13 | 326 | 125 | 445 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525360.1 | 0 | 13 | 345 | 124 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 9e-22 | 47 | 231 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 3e-19 | 51 | 285 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 3e-19 | 51 | 285 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 3e-19 | 51 | 285 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 3e-19 | 51 | 285 | 80 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EH685542 | 260 | 88 | 346 | 0 |
| FP038137 | 219 | 26 | 237 | 0 |
| DV135677 | 231 | 128 | 346 | 0 |
| DT763021 | 220 | 127 | 346 | 0 |
| CA929934 | 206 | 11 | 209 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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