Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.002G189900.1 |
Family | PL1 |
Protein Properties | Length: 407 Molecular Weight: 44868.2 Isoelectric Point: 10.0655 |
Chromosome | Chromosome/Scaffold: 02 Start: 51168507 End: 51170306 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 120 | 325 | 0 |
IQDKPLWIIFARDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQYATNIIIHGINIHDCKRGGNLYVRDSPTHYGWRTTSDGDGVSIFGSSHVWVD HCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSANPTINSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 407 Download |
MAIPLSLFLL VFSFLAPSIF SASPVQDPEQ VVRQVNESIR NATAARRKLG FLSCGTGNPI 60 DDCWRCDPNW AKNRKRLADC GIGFGKRAIG GRNGKFYVVT DPSDRDPVNP KPGTLRHAVI 120 QDKPLWIIFA RDMVIKLKAE LLMNSFKTID GRGVSVHIAG GPCITIQYAT NIIIHGINIH 180 DCKRGGNLYV RDSPTHYGWR TTSDGDGVSI FGSSHVWVDH CSLSNCNDGL IDAIHGSTAI 240 TISNNYMTHH DKVMLLGHSD SYTQDKNMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 THWIMYAIGG SANPTINSQG NRFLAPDKMN NKEVTKRENT PRKKWKKWNW RSRGDLMLNG 360 AFFTPSGTGA LSSYAKASSL SARPSSLVSS VTAGAGALVC RKGRRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-26 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-71 | 143 | 323 | 190 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-82 | 132 | 327 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU21247.1 | 0 | 17 | 406 | 18 | 406 | unknown [Glycine max] |
DDBJ | BAB59066.1 | 0 | 21 | 406 | 27 | 409 | pectate lyase [Salix gilgiana] |
RefSeq | NP_564906.1 | 0 | 17 | 406 | 22 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002318694.1 | 0 | 1 | 406 | 1 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 1 | 406 | 1 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-20 | 127 | 325 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 8e-16 | 187 | 397 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 8e-16 | 187 | 397 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |