y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.003G036400.1 |
Family | PL4 |
Protein Properties | Length: 680 Molecular Weight: 79124.1 Isoelectric Point: 7.4245 |
Chromosome | Chromosome/Scaffold: 03 Start: 3773953 End: 3778630 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 48 | 660 | 0 |
TNDVRLHISDRQVIIDNGLVEVTIENPSGYLIGIKYKEMENVLERRNHNSNRGYWDIVWDDDAYDKLETKHVEVITQTNDIVELSFTKTWSSKNHGKTLP LNIQKRYIVRRGISGVYMYGIFERQEDFPEAHMYQIRIAFKLQEDKFRFMAISDTIQRVMPQSEDRVKGHSKPLDFKEAVLLTNPSNPKLKGEVDDKYQY STENKDNKLNGWISDHDAVSFWIMTPSNEFRTGGPHKQDLTSHVGPTALSMFVSTHYTGPEIDTFYKEGEAWKKVFGPVLIYLNSASSKDDDHRKILWND AKRQLSEEIESWPYNFTRSEDFPHSQQRGQVNGQLLVQDRYMDKQLMQAKSAFVGLAPPGEVDSWQKEGKGYQFWTQTDKIGRFNIKNVRPGVYNLYAWV HGFIGSYKLDLNITIQPGNKIELGTLIYDPPRNGPTLWEIGIPDRTAAEFFIPEPYPQYVNSITNDGADKFRQYGLWDRYSNIYRDSDLVYTVGASNYSK DWFFAHVPRKTGDDRYRPTTWQIKYNLQDVNNRGTYTLQMAIAAASFAEVEVRFNDPNSDRPHFTTRRIGYDNAVPRHGIHGLYRLYSIEVPGYRFRKGN NTIYLTQTRSDNP |
Full Sequence |
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Protein Sequence Length: 680 Download |
MEKVVNMSHW RSKLVLWMIM VIQLSLFLSV FSTEIHARKL LKDNHINTND VRLHISDRQV 60 IIDNGLVEVT IENPSGYLIG IKYKEMENVL ERRNHNSNRG YWDIVWDDDA YDKLETKHVE 120 VITQTNDIVE LSFTKTWSSK NHGKTLPLNI QKRYIVRRGI SGVYMYGIFE RQEDFPEAHM 180 YQIRIAFKLQ EDKFRFMAIS DTIQRVMPQS EDRVKGHSKP LDFKEAVLLT NPSNPKLKGE 240 VDDKYQYSTE NKDNKLNGWI SDHDAVSFWI MTPSNEFRTG GPHKQDLTSH VGPTALSMFV 300 STHYTGPEID TFYKEGEAWK KVFGPVLIYL NSASSKDDDH RKILWNDAKR QLSEEIESWP 360 YNFTRSEDFP HSQQRGQVNG QLLVQDRYMD KQLMQAKSAF VGLAPPGEVD SWQKEGKGYQ 420 FWTQTDKIGR FNIKNVRPGV YNLYAWVHGF IGSYKLDLNI TIQPGNKIEL GTLIYDPPRN 480 GPTLWEIGIP DRTAAEFFIP EPYPQYVNSI TNDGADKFRQ YGLWDRYSNI YRDSDLVYTV 540 GASNYSKDWF FAHVPRKTGD DRYRPTTWQI KYNLQDVNNR GTYTLQMAIA AASFAEVEVR 600 FNDPNSDRPH FTTRRIGYDN AVPRHGIHGL YRLYSIEVPG YRFRKGNNTI YLTQTRSDNP 660 FEAVMYDYIR LEGPNSLND* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-31 | 374 | 473 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-47 | 485 | 672 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-63 | 51 | 339 | 299 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-68 | 47 | 241 | 199 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 60 | 674 | 62 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 15 | 674 | 15 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 60 | 674 | 1 | 617 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 1 | 675 | 1 | 668 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 60 | 674 | 2 | 618 | lyase, putative [Ricinus communis] |