Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.003G036600.1 |
Family | PL4 |
Protein Properties | Length: 686 Molecular Weight: 79954.2 Isoelectric Point: 8.8368 |
Chromosome | Chromosome/Scaffold: 03 Start: 3813256 End: 3818006 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 49 | 666 | 0 |
NDVRLHISDRLVVIDNGLVEVTIENPSGYLIGIKYKKIQNVLERRNHNSNRGYSNFLEYWDIVWDGNSYDKLETKHVEVITQTNDIVELSFTKTWNSKNH GKTIPLNIQKRYIVRRGISGVYMYGIFERQEDFPKAHMYQIRIAFKLKEDKFRFMALSDTIQRVMPRSEDRVKGHSKPLDFKEAVLLTNPSNPKLKGEVD DKYQYSTENKDNKLNGWISDHDSVGFWIMTPSNEFRTGGPHKQDLTSHVGPTALSMFVSTHYTGTEIDTFYKEGEAWKKVFGPVLIYLNSASSKDDDHRK IMWNDAKRQLSEEIESWPYNFTRSEDFPHSQQRGQVNGQLLVQDRYMDKQLMQAKSAFVGLAPPGEADSWQKEGKGYQFWTQTDEIGRFNIKNVRPGVYN LYAWVHGFIGSYKLDPDIIIQPGNKIELDTLIYDPPRNGPTLWEIGIPDRTAAEFFIPEPYPQYVNSITNDGADKFRQYGLWDRYSDIYRDSDLVYTVGT SNYSKDWFFAHVPRKIGDDRYRPTTWQIKYNLQDVNNRGTYTLQMAIAAASFAEVEVRFNDPNSDRPHFTTKRIGYDNAVPRHGIHGLYRLYSIEVPGYR FRKGSNIIYLTQTRSDNS |
Full Sequence |
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Protein Sequence Length: 686 Download |
MEKVVNMSHW RRKLVLWMVM VIQLSLFLSV FSTEIHARKF LKDNHINTND VRLHISDRLV 60 VIDNGLVEVT IENPSGYLIG IKYKKIQNVL ERRNHNSNRG YSNFLEYWDI VWDGNSYDKL 120 ETKHVEVITQ TNDIVELSFT KTWNSKNHGK TIPLNIQKRY IVRRGISGVY MYGIFERQED 180 FPKAHMYQIR IAFKLKEDKF RFMALSDTIQ RVMPRSEDRV KGHSKPLDFK EAVLLTNPSN 240 PKLKGEVDDK YQYSTENKDN KLNGWISDHD SVGFWIMTPS NEFRTGGPHK QDLTSHVGPT 300 ALSMFVSTHY TGTEIDTFYK EGEAWKKVFG PVLIYLNSAS SKDDDHRKIM WNDAKRQLSE 360 EIESWPYNFT RSEDFPHSQQ RGQVNGQLLV QDRYMDKQLM QAKSAFVGLA PPGEADSWQK 420 EGKGYQFWTQ TDEIGRFNIK NVRPGVYNLY AWVHGFIGSY KLDPDIIIQP GNKIELDTLI 480 YDPPRNGPTL WEIGIPDRTA AEFFIPEPYP QYVNSITNDG ADKFRQYGLW DRYSDIYRDS 540 DLVYTVGTSN YSKDWFFAHV PRKIGDDRYR PTTWQIKYNL QDVNNRGTYT LQMAIAAASF 600 AEVEVRFNDP NSDRPHFTTK RIGYDNAVPR HGIHGLYRLY SIEVPGYRFR KGSNIIYLTQ 660 TRSDNSFEAV MYDYIRLEGP NSLNN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.007 | 429 | 477 | 49 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 6.0e-30 | 380 | 479 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-47 | 491 | 678 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 7.0e-60 | 51 | 345 | 305 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-66 | 47 | 247 | 205 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 60 | 680 | 62 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 15 | 680 | 15 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 60 | 680 | 1 | 617 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 1 | 681 | 1 | 668 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 59 | 680 | 1 | 618 | lyase, putative [Ricinus communis] |