| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.003G066600.1 |
| Family | GH28 |
| Protein Properties | Length: 486 Molecular Weight: 52668.5 Isoelectric Point: 8.4808 |
| Chromosome | Chromosome/Scaffold: 03 Start: 13570900 End: 13575497 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 112 | 457 | 0 |
| QRLSNKGGGQLNVPKGKWLTGSFNLTSNFTLFLEDGAVILGSQDPKEWPVVEPLPSYGRGRERLGGRHISLIHGDGLTNVVITGQNGTIDGQGGMWWDLW QNRRLTHTRGHLVELMNSHNILISNLTFRNSPFWTIHPIYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGIRVAR PSSNIIVRRISGTTPTCSGVGIGSEMSGGISNVIIEDMNIWNSAAGVRIKTDKGRGGYIANITIKNITMERVKIPIMFSRGANDHPDYGWDPKAIPKIKG IFISNIMSLNSTKAPILAGIKGGSFEGLCFKNVTLLGLAPTAAWHC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 486 Download |
| MEPERPNYGA IMVHLKKPYW VFLILLFTFV AVLTFQISTK DILPFQFFGV TGSRKTSVTS 60 GSDPVPDPGS CAGLLGEFPE RKHVMSIKEF GGVGDGKTSN TAAFWKAIVH MQRLSNKGGG 120 QLNVPKGKWL TGSFNLTSNF TLFLEDGAVI LGSQDPKEWP VVEPLPSYGR GRERLGGRHI 180 SLIHGDGLTN VVITGQNGTI DGQGGMWWDL WQNRRLTHTR GHLVELMNSH NILISNLTFR 240 NSPFWTIHPI YCSNVVIKGM TILAPLNAPN TDGIDPDSST NVCIEDCYIE SGDDLVAVKS 300 GWDQYGIRVA RPSSNIIVRR ISGTTPTCSG VGIGSEMSGG ISNVIIEDMN IWNSAAGVRI 360 KTDKGRGGYI ANITIKNITM ERVKIPIMFS RGANDHPDYG WDPKAIPKIK GIFISNIMSL 420 NSTKAPILAG IKGGSFEGLC FKNVTLLGLA PTAAWHCEFV SGCTNAVFPL PCPQLQNNGS 480 SACCI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 6.0e-22 | 79 | 388 | 328 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-26 | 85 | 466 | 396 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 2.0e-29 | 83 | 394 | 328 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-35 | 183 | 472 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-60 | 84 | 397 | 338 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN76963.1 | 0 | 70 | 485 | 51 | 466 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37530.1 | 0 | 1 | 485 | 1 | 477 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274138.1 | 0 | 1 | 485 | 1 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310517.1 | 0 | 70 | 484 | 20 | 434 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526639.1 | 0 | 67 | 484 | 57 | 477 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.00053e-42 | 77 | 448 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.00053e-42 | 77 | 448 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.00053e-42 | 77 | 448 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.00053e-42 | 77 | 448 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-21 | 129 | 389 | 52 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
