Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.003G094800.1 |
Family | PL1 |
Protein Properties | Length: 435 Molecular Weight: 48794.8 Isoelectric Point: 9.4433 |
Chromosome | Chromosome/Scaffold: 03 Start: 29707859 End: 29710478 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 149 | 354 | 0 |
IQKEPLWIIFAHHMVIRLNQELIMAGDKTIDGRGFQIHIVGGAQITLQFINNVIIHGLHIRNSVQAHGGMIRDSVDHYGQRTMSDGDGITIFGSHNIWID HLSMSKCYDGLIDILMASTAITISNCHFTNHNDVFLFGSSDSFSDDQIMQVTVAFNHFGKGLVQRMPRVRWGFVHVVNNDYTHWLMYAIGGSKNPTILSE GNRFIA |
Full Sequence |
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Protein Sequence Length: 435 Download |
MTMKVVKIVL FLGLIVYSPI VKGNIGHFDE VWQERAENAK KGAFKAYNPN PENVTSDFNR 60 ETEKVLEGQN NTRRGLYKHH GPCLATNPID RCWRCDPNWA KDRKKLVNCV LGFGRKTTGG 120 KAGRYYVVTD PSDNDMVNPK PGTLRHAVIQ KEPLWIIFAH HMVIRLNQEL IMAGDKTIDG 180 RGFQIHIVGG AQITLQFINN VIIHGLHIRN SVQAHGGMIR DSVDHYGQRT MSDGDGITIF 240 GSHNIWIDHL SMSKCYDGLI DILMASTAIT ISNCHFTNHN DVFLFGSSDS FSDDQIMQVT 300 VAFNHFGKGL VQRMPRVRWG FVHVVNNDYT HWLMYAIGGS KNPTILSEGN RFIAPPDKRA 360 KEITKREYSP ESVWKSWKWR SVNDLMMNGA FFVESGGPIS RGNEKDVINA KTGASAGRLT 420 RFAGALNCVE HKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 7.0e-16 | 24 | 76 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-23 | 175 | 352 | 190 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-54 | 168 | 352 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-64 | 162 | 356 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 16 | 434 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 16 | 434 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 10 | 434 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 2 | 434 | 3 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 434 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 87 | 426 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 87 | 426 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-20 | 156 | 354 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.00000000000001 | 172 | 364 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 0.00000000000003 | 172 | 364 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |