y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.003G108300.1 |
Family | PL1 |
Protein Properties | Length: 412 Molecular Weight: 45093.9 Isoelectric Point: 7.1022 |
Chromosome | Chromosome/Scaffold: 03 Start: 33171722 End: 33173595 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 125 | 331 | 0 |
IQDEPLWIIFARDMTIQLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGLNIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSHVWVD HNSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRFTAP |
Full Sequence |
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Protein Sequence Length: 412 Download |
MARTMAMAIP SLPLLFLFTF LLLLPLLISS SPVQDPELVV QDVHRAINAS RRNLGYLSCG 60 TGNPIDDCWR CDPNWETNRQ KLADCAIGFG KNAIGGRDGK IYVVTDSGDD DPVNPKPGTL 120 RHAVIQDEPL WIIFARDMTI QLKEELIMNS FKTIDGRGAS VHIAGGPCIT VQYVTNIIIH 180 GLNIHDCKQG GNAMVRDSPR HYGWRTISDG DGVSIFGGSH VWVDHNSLSN CKDGLIDAIH 240 GSTAITISNN YMTHHDKVML LGHSDSYTQD KNMQVTIAFN HFGEGLVQRM PRCRHGYFHV 300 VNNDYTHWEM YAIGGSANPT INSQGNRFTA PDNRFSKEVT KHEDAPESEW KSWNWRSEGD 360 LMVNGAFFIA SGAGASSSYA KASSLGARPS SLVATITTNA GALNCKKGSR C* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-25 | 150 | 328 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-73 | 143 | 328 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-80 | 137 | 332 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADB90475.1 | 0 | 34 | 411 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
GenBank | ADB90476.1 | 0 | 34 | 411 | 34 | 411 | pectate lyase [Gossypium raimondii] |
GenBank | ADB90477.1 | 0 | 34 | 411 | 34 | 411 | pectate lyase [Gossypium hirsutum] |
GenBank | ADB90478.1 | 0 | 34 | 411 | 34 | 411 | pectate lyase [Gossypium hirsutum] |
GenBank | ADB90479.1 | 0 | 34 | 411 | 34 | 411 | pectate lyase [Gossypium barbadense] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 63 | 403 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 63 | 403 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-16 | 132 | 328 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000009 | 208 | 329 | 187 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.00000000000002 | 197 | 402 | 128 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |