Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.003G110300.1 |
Family | CE8 |
Protein Properties | Length: 374 Molecular Weight: 40227.9 Isoelectric Point: 8.6613 |
Chromosome | Chromosome/Scaffold: 03 Start: 33897322 End: 33898872 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 73 | 358 | 0 |
KVVQGGGGDFDTITKAIESVPTGNTKRVIISIGPGAYREKIKIERTKPFITLIGDPKRMANLTFDGTAKQYGTVASATLIVESDFFVAANLFIVNTAPKP DGKMEGEQGVSLRVSGDKAAFYNCKIIGFRNTLCDDKGNHFFMNCYIHGTVDFIFGNGKSLYLETELYVEADKGLTAITAQERGNNEQDRTGFSFVQCKI TGTAQGAYLGRARKSSPRVVFAFSDMSNVVNPEGWSHDLSPERAQTVFYGEYKCSGPGAAPAGRVPYSSQLTEMVARQFLTLGFVD |
Full Sequence |
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Protein Sequence Length: 374 Download |
MTGKKIGMIE VGAIISTILL LARLVVSQSS AEIPADKSQV NAWFNANVKP ASARVGTIDP 60 ALAQAEAEPK VIKVVQGGGG DFDTITKAIE SVPTGNTKRV IISIGPGAYR EKIKIERTKP 120 FITLIGDPKR MANLTFDGTA KQYGTVASAT LIVESDFFVA ANLFIVNTAP KPDGKMEGEQ 180 GVSLRVSGDK AAFYNCKIIG FRNTLCDDKG NHFFMNCYIH GTVDFIFGNG KSLYLETELY 240 VEADKGLTAI TAQERGNNEQ DRTGFSFVQC KITGTAQGAY LGRARKSSPR VVFAFSDMSN 300 VVNPEGWSHD LSPERAQTVF YGEYKCSGPG AAPAGRVPYS SQLTEMVARQ FLTLGFVDGS 360 KWLLPPPNVQ INS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 4.0e-80 | 70 | 365 | 306 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-85 | 70 | 363 | 303 | + pectinesterase | ||
PLN02432 | PLN02432 | 8.0e-87 | 71 | 363 | 294 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-103 | 14 | 365 | 370 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 13 | 368 | 356 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309337.1 | 0 | 1 | 368 | 1 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 15 | 368 | 11 | 364 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321778.1 | 0 | 2 | 368 | 3 | 362 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 15 | 368 | 12 | 365 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511045.1 | 0 | 6 | 368 | 8 | 366 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 8e-39 | 69 | 363 | 7 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-32 | 74 | 363 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 5e-18 | 71 | 239 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-18 | 71 | 239 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 5e-18 | 71 | 239 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |