| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.003G155800.1 |
| Family | GH28 |
| Protein Properties | Length: 491 Molecular Weight: 53780.8 Isoelectric Point: 4.9312 |
| Chromosome | Chromosome/Scaffold: 03 Start: 42474726 End: 42477019 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 70 | 416 | 0 |
| DGGSLLFVPPGKWLTGSFSLTSHFTLHIHKDATLLASQDESEWAVIDPLPSYGRGRDADGGRYISLIFGTNLTDVVITGDNGTIDGQGVTWWNKFHKGEL KYTRPYLIEIMYSNEVQISNLTLMNSPSWNVHPVYSSNVVVQGLTILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGMPTKQL VIRRLTCISPFSAVIALGSEMSGGIEDVRAEDITGINSESAVRIKTAVGRGNYVKDIYVRRMTMKTMKMVFWMAGNYGSHPDNDYDPNAIPVIQNINFRD VVAENVTMAARLEGIPGHPFSGICISNTTIGLTQKPKKIQWNCTEIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 491 Download |
| MEMWTIQRRN QVLDTILLLG IVLVLINING VESRKYSASL TDFGGVGDGV TSNTKAFQAA 60 IFNLSQYASD GGSLLFVPPG KWLTGSFSLT SHFTLHIHKD ATLLASQDES EWAVIDPLPS 120 YGRGRDADGG RYISLIFGTN LTDVVITGDN GTIDGQGVTW WNKFHKGELK YTRPYLIEIM 180 YSNEVQISNL TLMNSPSWNV HPVYSSNVVV QGLTILAPVT SPNTDGINPD SCTNTRIEDC 240 YIVSGDDCVA VKSGWDEYGI KFGMPTKQLV IRRLTCISPF SAVIALGSEM SGGIEDVRAE 300 DITGINSESA VRIKTAVGRG NYVKDIYVRR MTMKTMKMVF WMAGNYGSHP DNDYDPNAIP 360 VIQNINFRDV VAENVTMAAR LEGIPGHPFS GICISNTTIG LTQKPKKIQW NCTEIAGVSS 420 NVTPQPCNLL TDQGPDNACN FPEDSFTSAI VYGSTRLTRT PMNNEEQCHI GNSAERSLSQ 480 YISTWEIDFS * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-16 | 43 | 333 | 302 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-22 | 37 | 399 | 380 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 7.0e-23 | 40 | 337 | 314 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-25 | 136 | 415 | 294 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-52 | 38 | 334 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002278930.1 | 0 | 22 | 446 | 37 | 463 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299511.1 | 0 | 1 | 446 | 1 | 463 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301370.1 | 0 | 8 | 444 | 23 | 451 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002303605.1 | 0 | 1 | 446 | 1 | 454 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 1 | 446 | 1 | 463 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.94922e-44 | 37 | 399 | 27 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.94922e-44 | 37 | 399 | 27 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.94922e-44 | 37 | 399 | 27 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.94922e-44 | 37 | 399 | 27 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000001 | 54 | 373 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
