y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.003G171400.2 |
Family | CE8 |
Protein Properties | Length: 271 Molecular Weight: 29901.4 Isoelectric Point: 8.5305 |
Chromosome | Chromosome/Scaffold: 03 Start: 44273194 End: 44276607 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 7 | 260 | 0 |
REKVVVPATKPYITFQGAGRETTFIEWHDRACDRGSNGQQLRTYQTASVTVYANYFSARNISFKNTAPAPKPGMQGWQAVAFRISGDKAYFSGCGFYGAQ DTLCDDAGRHYFKQCYIEGSIDFIFGNGRSMYKECELHSIATRFGSIAAHDRKSPDEKSGFAFVNCTVTGTGPLYVGRAMGQYSRIVYSYTYFDNLVAQG GWDDWDHVNNQNKTVFFGVYKCWGPGAAAVGGVGRAKELDFGTAHRFLAKSFVN |
Full Sequence |
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Protein Sequence Length: 271 Download |
MCGGDGREKV VVPATKPYIT FQGAGRETTF IEWHDRACDR GSNGQQLRTY QTASVTVYAN 60 YFSARNISFK NTAPAPKPGM QGWQAVAFRI SGDKAYFSGC GFYGAQDTLC DDAGRHYFKQ 120 CYIEGSIDFI FGNGRSMYKE CELHSIATRF GSIAAHDRKS PDEKSGFAFV NCTVTGTGPL 180 YVGRAMGQYS RIVYSYTYFD NLVAQGGWDD WDHVNNQNKT VFFGVYKCWG PGAAAVGGVG 240 RAKELDFGTA HRFLAKSFVN GRHWIAPWDA * 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 5.0e-87 | 3 | 267 | 267 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 5.0e-94 | 8 | 270 | 272 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 8.0e-97 | 7 | 265 | 261 | + pectinesterase | ||
PLN02682 | PLN02682 | 9.0e-112 | 7 | 267 | 261 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 7 | 270 | 264 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD65006.1 | 0 | 7 | 270 | 81 | 344 | pectinesterase family protein [Brassica oleracea] |
EMBL | CBI31927.1 | 0 | 8 | 270 | 87 | 349 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266321.1 | 0 | 8 | 270 | 94 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 8 | 267 | 55 | 314 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528921.1 | 0 | 8 | 270 | 14 | 276 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 6e-33 | 7 | 265 | 47 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-24 | 4 | 265 | 40 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 0.00000000000003 | 8 | 145 | 46 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.00000000000003 | 8 | 145 | 46 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 0.00000000000003 | 8 | 145 | 46 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY273837 | 263 | 8 | 270 | 0 |
EX098970 | 265 | 7 | 271 | 0 |
EG517791 | 265 | 7 | 271 | 0 |
DW492576 | 212 | 8 | 219 | 0 |
FC912864 | 238 | 8 | 245 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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