| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.004G037600.1 |
| Family | GH28 |
| Protein Properties | Length: 391 Molecular Weight: 43001 Isoelectric Point: 9.0111 |
| Chromosome | Chromosome/Scaffold: 04 Start: 3105089 End: 3109017 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 96 | 385 | 0 |
| LACNSSQGAIVVVPKNKIYHLKPIDFFGPCNSPLIVKIHGTIKATVHHSDYKAHGRRRCLYFANVQNLRVEGGGIINGNGRTWWQNSCKINIALPCKEAP TALTFSQCSNLRVAGLRIRNAQQMHLSFNKCVNVKALNLSVIAPGNSPNTDGIHVSETHNIHIKNCVIKTGDDCISVVSGSQNVRATDITCGPGHGISIG SLGARNSAAYVSNVIVNRATISDTTNGVRIKTWQGGSGYAKNIKFQNIMVHNVSNPIIIDQNYCDHHKSPCPCKVSAVQVSNVIYENIRG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 391 Download |
| MWLKTLCVPL FITFICLSTS CFGSYREDPF HSDVRQTHVY SRPTTYNQQD NVNPINNNEV 60 WSRIDRVTLK VINVDEFGAK ANGFDDSQAF KEAWELACNS SQGAIVVVPK NKIYHLKPID 120 FFGPCNSPLI VKIHGTIKAT VHHSDYKAHG RRRCLYFANV QNLRVEGGGI INGNGRTWWQ 180 NSCKINIALP CKEAPTALTF SQCSNLRVAG LRIRNAQQMH LSFNKCVNVK ALNLSVIAPG 240 NSPNTDGIHV SETHNIHIKN CVIKTGDDCI SVVSGSQNVR ATDITCGPGH GISIGSLGAR 300 NSAAYVSNVI VNRATISDTT NGVRIKTWQG GSGYAKNIKF QNIMVHNVSN PIIIDQNYCD 360 HHKSPCPCKV SAVQVSNVIY ENIRGPPMLP * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-76 | 73 | 385 | 316 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 5.0e-80 | 72 | 385 | 320 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-103 | 98 | 385 | 288 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-125 | 65 | 385 | 327 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-128 | 70 | 385 | 317 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26512.1 | 0 | 70 | 385 | 86 | 398 | polygalacturonase precursor [Cucumis melo] |
| EMBL | CBI29907.1 | 0 | 1 | 385 | 1 | 386 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002282759.1 | 0 | 1 | 385 | 1 | 386 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002313308.1 | 0 | 68 | 385 | 5 | 320 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517823.1 | 0 | 20 | 385 | 22 | 391 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 4e-22 | 168 | 385 | 77 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-22 | 168 | 385 | 77 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-22 | 168 | 385 | 77 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-22 | 168 | 385 | 77 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 4e-22 | 168 | 385 | 77 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
