| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.004G066400.1 |
| Family | GH28 |
| Protein Properties | Length: 462 Molecular Weight: 50822.6 Isoelectric Point: 9.1172 |
| Chromosome | Chromosome/Scaffold: 04 Start: 6821839 End: 6824518 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 114 | 445 | 0 |
| NYACSSSQGAIMVVPKKKIYRLKPINFSGPCKSPLLLKIYGTLEATEDHSDYQDNGRRWLYFDNVENLRVEGGGIIDGNGKTWWEKSCKVNKALPCKEAP TAVTFNECTNLRVSSLRIKDAQQMHVIFQKCVNVKAFNLLVTAPGNSPNTDGIHVTGTQNIYINNCVIGTGDDCISIVSGSKNVRATGITCGPGHGISIG SLGAGNSAAYVSNVMINKATLSGTDNGVRIKTWQGGSGYAKNIKFQNIVMYNVSNPIIIDQNYCDQENPCRKQTSAVQVSNVLYQNIRGTSASNVAMKFD CSQSVPCRQIYLQNVALKAEETEQASSSCANV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 462 Download |
| MMFLKTLCLP LVITFLSLSS YCFGLGRYRE EDPFHVDFRR GRAYHLPTSY RHPYFRTFGV 60 RGQPNYHNSY YKNEIQSRLD RASGAATPKV VNVDDFGAKA NGRDDSQAFK KAWNYACSSS 120 QGAIMVVPKK KIYRLKPINF SGPCKSPLLL KIYGTLEATE DHSDYQDNGR RWLYFDNVEN 180 LRVEGGGIID GNGKTWWEKS CKVNKALPCK EAPTAVTFNE CTNLRVSSLR IKDAQQMHVI 240 FQKCVNVKAF NLLVTAPGNS PNTDGIHVTG TQNIYINNCV IGTGDDCISI VSGSKNVRAT 300 GITCGPGHGI SIGSLGAGNS AAYVSNVMIN KATLSGTDNG VRIKTWQGGS GYAKNIKFQN 360 IVMYNVSNPI IIDQNYCDQE NPCRKQTSAV QVSNVLYQNI RGTSASNVAM KFDCSQSVPC 420 RQIYLQNVAL KAEETEQASS SCANVILSYR GDVSPPCSSR S* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-98 | 91 | 445 | 362 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 7.0e-103 | 84 | 457 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-125 | 117 | 445 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 9.0e-151 | 80 | 458 | 382 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-152 | 81 | 461 | 387 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26512.1 | 0 | 66 | 457 | 61 | 458 | polygalacturonase precursor [Cucumis melo] |
| GenBank | AAF71160.1 | 0 | 2 | 457 | 1 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
| Swiss-Prot | P35336 | 0 | 2 | 457 | 1 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002313308.1 | 0 | 86 | 458 | 4 | 376 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517823.1 | 0 | 77 | 457 | 66 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-23 | 116 | 437 | 25 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-20 | 186 | 445 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-20 | 186 | 445 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-20 | 186 | 445 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-20 | 186 | 445 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
