| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.004G134000.2 |
| Family | GH28 |
| Protein Properties | Length: 390 Molecular Weight: 43179.9 Isoelectric Point: 7.8085 |
| Chromosome | Chromosome/Scaffold: 04 Start: 36758865 End: 36763777 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 345 | 0 |
| RRGGTLLFVPSGVYLTDSFNLTSHMTLYLARGAVMKATQDTSNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLEDVVITGENGTIDGQGDIWWNMWRQRT LQFTRPSLVEFVNSRGIVISNVIFRNSPFWNIHPVYCSDVVIRYVTILAPPDSPNTDGIDPDSSSNVCIEDSFISTGDDLVAVKSGWDEYGIAYGRPSSY ITVRRVTGSTPFAGVAVGSETSGGVENVLAENINLYNSGVGVHIKTNIGRGGVIKNITVSELFMENVRTAS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 390 Download |
| MFRALASVLL CCFFLEASFW VHFSYGDLTT CSGIVPMTER GDKISITDFG GVGDGQTLNT 60 IAFRKAIYRI QHLRRRGGTL LFVPSGVYLT DSFNLTSHMT LYLARGAVMK ATQDTSNWPL 120 IAPLPSYGRG RERPGGRYMS FIHGDGLEDV VITGENGTID GQGDIWWNMW RQRTLQFTRP 180 SLVEFVNSRG IVISNVIFRN SPFWNIHPVY CSDVVIRYVT ILAPPDSPNT DGIDPDSSSN 240 VCIEDSFIST GDDLVAVKSG WDEYGIAYGR PSSYITVRRV TGSTPFAGVA VGSETSGGVE 300 NVLAENINLY NSGVGVHIKT NIGRGGVIKN ITVSELFMEN VRTASRLDAW HRECHFHRHL 360 SFKRYPPGHD WTKTSFLELQ CHKGGCNRG* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 4.0e-21 | 44 | 342 | 313 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-25 | 42 | 351 | 318 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-27 | 44 | 348 | 318 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-28 | 80 | 341 | 273 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 6.0e-56 | 45 | 343 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 1 | 347 | 1 | 344 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 9 | 347 | 8 | 346 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 1 | 347 | 1 | 344 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 37 | 347 | 1 | 311 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 28 | 347 | 26 | 345 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-39 | 43 | 341 | 27 | 347 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-39 | 43 | 341 | 27 | 347 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-39 | 43 | 341 | 27 | 347 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-39 | 43 | 341 | 27 | 347 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-18 | 85 | 385 | 49 | 339 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
