| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.004G138900.1 |
| Family | GH28 |
| Protein Properties | Length: 467 Molecular Weight: 50881.9 Isoelectric Point: 5.989 |
| Chromosome | Chromosome/Scaffold: 04 Start: 38902043 End: 38904285 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 90 | 431 | 0 |
| LFVPPGKWLTGSFNLTSHFTLYLHKDATILASQDESEWAVINPLPSYGRGRDADGGRYISLIFGTNLTDVVITGDNGTFDGQGATWWDKFHKGELKYTRP YLIEIMYSQGVQISNLTLMNSPSWNVHPVYSSNVVVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDEYGIKFGMPTKQLLIRRL TCISPFSAVIALGSEMSGGIEDVRAEDITGINSESAVRIKTAVGRGNYVKDIYVRRMTMKTMKMVFWMAGNYGSHPDNDYDPNAIPVIQNINFRDVVAEN VTMAARLEGIPGHPFTGICISNATIELTKKPKKIQWNCTEIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 467 Download |
| MWTTPGRKQA FGNIVLLGMV MVLINTNGVA SRKVRVLDSF DDSAAGCSRK YSASLTDFGG 60 VGDGVTSNTK AFQAAIDNLS LYASYGGSLL FVPPGKWLTG SFNLTSHFTL YLHKDATILA 120 SQDESEWAVI NPLPSYGRGR DADGGRYISL IFGTNLTDVV ITGDNGTFDG QGATWWDKFH 180 KGELKYTRPY LIEIMYSQGV QISNLTLMNS PSWNVHPVYS SNVVVQGITI LAPVTSPNTD 240 GINPDSCTNT RIEDCYIVSG DDCIAVKSGW DEYGIKFGMP TKQLLIRRLT CISPFSAVIA 300 LGSEMSGGIE DVRAEDITGI NSESAVRIKT AVGRGNYVKD IYVRRMTMKT MKMVFWMAGN 360 YGSHPDNDYD PNAIPVIQNI NFRDVVAENV TMAARLEGIP GHPFTGICIS NATIELTKKP 420 KKIQWNCTEI AGVSSDVTPK PCNLLKDLGS QNTCNFPEDD FPIVKF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 1.0e-16 | 57 | 442 | 409 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-20 | 52 | 415 | 377 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-20 | 55 | 352 | 315 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-27 | 151 | 424 | 288 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-50 | 53 | 349 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002278930.1 | 0 | 26 | 463 | 27 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299511.1 | 0 | 1 | 463 | 3 | 465 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301370.1 | 0 | 23 | 463 | 14 | 455 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002303605.1 | 0 | 1 | 463 | 3 | 456 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 26 | 463 | 27 | 465 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.96182e-44 | 52 | 418 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.96182e-44 | 52 | 418 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.96182e-44 | 52 | 418 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.96182e-44 | 52 | 418 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.0000000000006 | 69 | 388 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
