| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.004G147300.1 |
| Family | GH28 |
| Protein Properties | Length: 476 Molecular Weight: 52118 Isoelectric Point: 5.8027 |
| Chromosome | Chromosome/Scaffold: 04 Start: 41529091 End: 41532091 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 418 | 0 |
| SDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSDNPDDWPVVDPLPSYGRGVELPGGRHRSLIYGRNLTDVIITGDNGTIDGQGSVWWNWFKRK TLDYTRPHLVELMNSTGVVISNLTFSNSPFWTIHPVYCSHVIVQNVTILAPLDSPNTDGINPDSSNDVCIEDCYISTGDDLIAIKSGWDEYGISFARPST NIIIRRLIGHNRNGSGIAIGSEMSGGVSEVYAENLYFFDSSTAITIKTARGRGGYVRNIYILNVTLVGVDTAIRFDSTFSPHPDDFYDPNALPVIERITI KDVIGNNIKVAGLLEGIEGDTFHHVCLLNIALTVTSGSPWNCS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| MECCRQLVVL VDVLLVLAFC GHIAWTVKAS SQCKQALSRE IRPHSVAITE FGAVGDGVTL 60 NTKAFQNAIF YLNSFSDKGG AKLFVPAGRW LTGSFDLISH LTLWLDKDAV ILGSDNPDDW 120 PVVDPLPSYG RGVELPGGRH RSLIYGRNLT DVIITGDNGT IDGQGSVWWN WFKRKTLDYT 180 RPHLVELMNS TGVVISNLTF SNSPFWTIHP VYCSHVIVQN VTILAPLDSP NTDGINPDSS 240 NDVCIEDCYI STGDDLIAIK SGWDEYGISF ARPSTNIIIR RLIGHNRNGS GIAIGSEMSG 300 GVSEVYAENL YFFDSSTAIT IKTARGRGGY VRNIYILNVT LVGVDTAIRF DSTFSPHPDD 360 FYDPNALPVI ERITIKDVIG NNIKVAGLLE GIEGDTFHHV CLLNIALTVT SGSPWNCSYI 420 QGYSAMVSPE TCEPLKESIY PNHSSDCYHL SNHLRSSVGI LILAISQAQQ QPHHQ* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-25 | 43 | 354 | 328 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-27 | 150 | 384 | 242 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 7.0e-28 | 44 | 355 | 318 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 8.0e-67 | 46 | 351 | 332 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18828.1 | 0 | 25 | 457 | 22 | 453 | unknown [Glycine max] |
| EMBL | CBI37055.1 | 0 | 25 | 456 | 22 | 453 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 25 | 456 | 73 | 504 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 21 | 448 | 18 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 23 | 457 | 30 | 464 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 40 | 426 | 22 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 40 | 426 | 22 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 40 | 426 | 22 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 40 | 426 | 22 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 7e-20 | 42 | 396 | 153 | 545 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
