| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.004G147300.2 |
| Family | GH28 |
| Protein Properties | Length: 467 Molecular Weight: 51224.8 Isoelectric Point: 6.1042 |
| Chromosome | Chromosome/Scaffold: 04 Start: 41528557 End: 41532105 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 415 | 0 |
| SDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSDNPDDWPVVDPLPSYGRGVELPGGRHRSLIYGRNLTDVIITGDNGTIDGQGSVWWNWFKRK TLDYTRPHLVELMNSTGVVISNLTFSNSPFWTIHPVYCSHVIVQNVTILAPLDSPNTDGINPDSSNDVCIEDCYISTGDDLIAIKSGWDEYGISFARPST NIIIRRLIGHNRNGSGIAIGSEMSGGVSEVYAENLYFFDSSTAITIKTARGRGGYVRNIYILNVTLVGVDTAIRFDSTFSPHPDDFYDPNALPVIERITI KDVIGNNIKVAGLLEGIEGDTFHHVCLLNIALTVTSGSPWNCS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 467 Download |
| MKRSFSLVDV LLVLAFCGHI AWTVKASSQC KQALSREIRP HSVAITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFSDKGGAKL FVPAGRWLTG SFDLISHLTL WLDKDAVILG SDNPDDWPVV 120 DPLPSYGRGV ELPGGRHRSL IYGRNLTDVI ITGDNGTIDG QGSVWWNWFK RKTLDYTRPH 180 LVELMNSTGV VISNLTFSNS PFWTIHPVYC SHVIVQNVTI LAPLDSPNTD GINPDSSNDV 240 CIEDCYISTG DDLIAIKSGW DEYGISFARP STNIIIRRLI GHNRNGSGIA IGSEMSGGVS 300 EVYAENLYFF DSSTAITIKT ARGRGGYVRN IYILNVTLVG VDTAIRFDST FSPHPDDFYD 360 PNALPVIERI TIKDVIGNNI KVAGLLEGIE GDTFHHVCLL NIALTVTSGS PWNCSYIQGY 420 SAMVSPETCE PLKESIYPNH SSDCYHLSNH LRSSGNQNKG SWLHSW* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 7.0e-25 | 40 | 351 | 328 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-27 | 147 | 381 | 242 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 7.0e-28 | 41 | 352 | 318 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 2.0e-66 | 43 | 348 | 332 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18828.1 | 0 | 16 | 461 | 17 | 460 | unknown [Glycine max] |
| EMBL | CBI37055.1 | 0 | 1 | 466 | 1 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 22 | 466 | 73 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 1 | 445 | 1 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 20 | 466 | 30 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 37 | 423 | 22 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 37 | 423 | 22 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 37 | 423 | 22 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 37 | 423 | 22 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 9e-20 | 39 | 393 | 153 | 545 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
