Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.004G196900.1 |
Family | GT47 |
Protein Properties | Length: 516 Molecular Weight: 59684.5 Isoelectric Point: 10.2232 |
Chromosome | Chromosome/Scaffold: 04 Start: 51730997 End: 51734643 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 180 | 464 | 0 |
LKVYIYRDGKKPIFHQPRLNGIYASEGWFMKLMEANREFVTKEPEKAHLFYLPYSSRQLELALYVRNSHNLRPLSKFLRDYVNVIASKYPFWNRTHGSDH FLVACHDWGPFITTEHVELKDNAIKALCNADLKENFVAGKDVSLPETAIRIANKPLRNIGGGIRVSQRPILAFFAGKMHGRVRPKLLKHWLNKDADMRIY GPLSRRVSKNMSYVRHMKSSKYCICPMGYEVNSPRIVEAIYYECVPVIIADNFVLPLSEVLEWKAFSVTVAEIDIPKLKEILLAI |
Full Sequence |
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Protein Sequence Length: 516 Download |
MAENESKFEI LFGLWPRPVV DKSNLDDAGK AKASDGTGTK SSFDPKLSRF ESPNGTMHLS 60 KNLTEARLDK SQLVTSAPFV SLNSSIEAKE SARVLRMRQN RRKTIDVLKV VHPPPRRSVP 120 RHLQRYLQSL SSHEALLYAK REIEHAPLVK NVGNDSYLYA PVFQNISIFK RSYELMEMIL 180 KVYIYRDGKK PIFHQPRLNG IYASEGWFMK LMEANREFVT KEPEKAHLFY LPYSSRQLEL 240 ALYVRNSHNL RPLSKFLRDY VNVIASKYPF WNRTHGSDHF LVACHDWGPF ITTEHVELKD 300 NAIKALCNAD LKENFVAGKD VSLPETAIRI ANKPLRNIGG GIRVSQRPIL AFFAGKMHGR 360 VRPKLLKHWL NKDADMRIYG PLSRRVSKNM SYVRHMKSSK YCICPMGYEV NSPRIVEAIY 420 YECVPVIIAD NFVLPLSEVL EWKAFSVTVA EIDIPKLKEI LLAIPLKRYL QMLMNVKMVQ 480 KHFLWNPNPM RYDLFHMILH SIWYNRLNQI QIPQS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-68 | 180 | 464 | 302 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23466.1 | 0 | 47 | 512 | 55 | 535 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_567512.2 | 0 | 54 | 511 | 72 | 532 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002269459.1 | 0 | 47 | 515 | 55 | 538 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303362.1 | 0 | 129 | 515 | 2 | 386 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530666.1 | 0 | 52 | 515 | 57 | 528 | catalytic, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BX834842 | 336 | 177 | 511 | 0 |
GT051299 | 335 | 167 | 499 | 0 |
ES808098 | 342 | 142 | 483 | 0 |
EL422943 | 282 | 135 | 415 | 0 |
CV529785 | 252 | 218 | 467 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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